View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_high_42 (Length: 325)
Name: NF18007_high_42
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 7767896 - 7767586
Alignment:
| Q |
1 |
aaattaataaagttgtgacgaatcgttgatagtaaaagtcatttaattttagacacagcacaaaatttggtatgattgccatgttatttagagggaaaac |
100 |
Q |
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| T |
7767896 |
aaattaataaagttgtgacgaatcgttgatagtaaaagtcatttaattttagacacagcacaaaatttggtatgattgccatgttatttagagtgaaaac |
7767797 |
T |
|
| Q |
101 |
aatattttacaaatcatttcaaattttgtggcgctaatccattgagtgagggttgtggacaaacagtttttaactattctgaaagcaataaattaaagag |
200 |
Q |
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| T |
7767796 |
aatattttacaaatcatttcaaattttgtggcgctaatccattgagtgagggttgtggacaaactgtttttaactaatctgaaagcaataaattgaagag |
7767697 |
T |
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| Q |
201 |
-tttacaagcaaaatcctttgtgaagcagataaaattactttctttcnnnnnnnncc-ttcaagaaatgcatttagcctatcctgctcacatttcaactt |
298 |
Q |
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| T |
7767696 |
ttttacaagcaaaatccattgtgaagcagataaaattactttctttcttttttttcctttcaagaaatgcatttagcctatcctgctcacatttcaactt |
7767597 |
T |
|
| Q |
299 |
atactaacttg |
309 |
Q |
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| T |
7767596 |
atactaacttg |
7767586 |
T |
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