View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_high_46 (Length: 311)
Name: NF18007_high_46
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_46 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 128 - 297
Target Start/End: Original strand, 32266026 - 32266195
Alignment:
| Q |
128 |
attcacagctttactgttatgagattttgcagcaggaaaagaatcactttctgaactgttttcttcatcactctcaacatctgttgttgaatcataagaa |
227 |
Q |
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| T |
32266026 |
attcacagctttactgttatgagattttgcagcaggaaaagaatcactttctgaactgttttcttcatcactctcaacatctgttgttgaatcataagaa |
32266125 |
T |
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| Q |
228 |
atatcattgtccttttcataatcaaaaaactcatatttcaaacatttgctaccattctcatagatttctt |
297 |
Q |
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| T |
32266126 |
atatcattgtccttttcataatcaaaaaactcatatttcaaacttttgctaccattctcatagatttctt |
32266195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 32265917 - 32265956
Alignment:
| Q |
19 |
gtcctgacctgaaaattttataacaaattggacattcata |
58 |
Q |
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||||||||||||||||||| || ||||||||||||||||| |
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| T |
32265917 |
gtcctgacctgaaaattttgtagcaaattggacattcata |
32265956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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