View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18007_high_48 (Length: 307)

Name: NF18007_high_48
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18007_high_48
NF18007_high_48
[»] chr6 (12 HSPs)
chr6 (11-289)||(6515961-6516239)
chr6 (11-287)||(6505525-6505801)
chr6 (11-286)||(13035602-13035874)
chr6 (108-285)||(6526419-6526596)
chr6 (11-169)||(6472903-6473058)
chr6 (207-289)||(6465376-6465458)
chr6 (209-286)||(6528239-6528316)
chr6 (11-98)||(1841749-1841836)
chr6 (231-286)||(6473120-6473175)
chr6 (210-290)||(6457415-6457495)
chr6 (210-289)||(6520629-6520708)
chr6 (120-170)||(6457535-6457585)
[»] chr7 (3 HSPs)
chr7 (207-289)||(9665358-9665440)
chr7 (114-169)||(9665259-9665314)
chr7 (207-283)||(3753881-3753957)
[»] chr4 (2 HSPs)
chr4 (207-289)||(13536382-13536464)
chr4 (114-169)||(13536283-13536338)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 289
Target Start/End: Original strand, 6515961 - 6516239
Alignment:
Q  11 aagcaaaggtataaaagaagaatcacatgatgaaattgtttcgtcgcttttaaaagatattgaaggtttaaattcatcagcaataacatcaattacttca 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6515961 aagcaaaggtataaaagaagaatcacatgatgaaattgtttcgtcgcttttaaaagatgttgaaggtttaaattcatcagcaataacatcaattacttca 6516060  T
Q  111 tcttacttctatggacaattgattgcaagagcagcaaggttagcattgatagctgaagaannnnnnnncgttgacgctattcaaaaagtcagaagctttt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  6516061 tcttacttctatggacaattgattgcaagagcagcaaggttagcattgatagctgaagaattttttttcgttgacgctattcaaaaagtcagaagctttt 6516160  T
Q  211 tgaaggaaacaattgaaccatggcttgatggaacttttaacggaaatggatttctgtatgacaaaaaatggggaggaat 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6516161 tgaaggaaacaattgaaccatggcttgatggaacttttaacggaaatggatttctgtatgacaaaaaatggggaggaat 6516239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 287
Target Start/End: Complemental strand, 6505801 - 6505525
Alignment:
Q  11 aagcaaaggtataaaagaagaatcacatgatgaaattgtttcgtcgcttttaaaagatattgaaggtttaaattcatcagcaataacatcaattacttca 110  Q
    |||||||||| ||||||| |||||||   ||||||||||||| || ||||  |||||| ||||||||||||| ||||| |||| || |  ||  |  ||     
T  6505801 aagcaaaggtgtaaaagacgaatcacgcaatgaaattgtttcatcactttctaaagatgttgaaggtttaaactcatctgcaacaaaacaaacaaaatcg 6505702  T
Q  111 tcttacttctatggacaattgattgcaagagcagcaaggttagcattgatagctgaagaannnnnnnncgttgacgctattcaaaaagtcagaagctttt 210  Q
    ||||| || |||||| |||| |||||||||||||| ||| | |||||||||||||||||         | |||| |||||| ||||||| |||| |||||    
T  6505701 tcttatttttatggaaaattaattgcaagagcagctaggcttgcattgatagctgaagaggttttcttctttgatgctattgaaaaagtaagaaactttt 6505602  T
Q  211 tgaaggaaacaattgaaccatggcttgatggaacttttaacggaaatggatttctgtatgacaaaaaatggggagga 287  Q
    |||||||||| ||||| || |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||    
T  6505601 tgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggagga 6505525  T

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Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 13035602 - 13035874
Alignment:
Q  11 aagcaaaggtataaaagaagaatcacatgatgaaattgtttcgtcgcttttaaaagatattgaaggtttaaattcatcagcaataacatcaattacttca 110  Q
    |||||||||| |||||||||||||||||||  ||||||||||  | ||||  |||||| |||||||| |||| |||||| | |||||| | |   | |||    
T  13035602 aagcaaaggtgtaaaagaagaatcacatgacaaaattgtttcagctctttcgaaagatgttgaaggtctaaagtcatcaccgataacaacga---catca 13035698  T
Q  111 tcttacttctatggacaattgattgcaagagcagcaaggttagcattgatagctgaagaannnnnnnncgttgacgctattcaaaaagtca-gaagcttt 209  Q
    |||||||| |||||| ||||||| |||||||| |||||||||||||||||| |||||||         | |||| || |||| ||  || | |||| |      
T  13035699 tcttacttttatggaaaattgatagcaagagctgcaaggttagcattgataactgaagaggtgaattaccttgatgcaattccaattgtgaagaag-tac 13035797  T
Q  210 ttgaaggaaacaattgaaccatggcttgatggaacttttaacggaaatggatttctgtatgacaaaaaatggggagg 286  Q
    ||||||||| | ||||| || |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  13035798 ttgaaggaatccattgagccttggcttgatggaacttttaatggaaatggatttctctatgataaaaaatggggagg 13035874  T

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Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 285
Target Start/End: Complemental strand, 6526596 - 6526419
Alignment:
Q  108 tcatcttacttctatggacaattgattgcaagagcagcaaggttagcattgatagctgaagaannnnnnnncgttgacgctattcaaaaagtcagaagct 207  Q
    |||||||| || |||||| |||||||||||||||| |||||  | ||||||||||| |||||         | |||| |  |||| |||||| ||||  |    
T  6526596 tcatcttatttttatggaaaattgattgcaagagctgcaagacttgcattgatagcggaagaggtttgtttccttgatgtgattccaaaagttagaaagt 6526497  T
Q  208 ttttgaaggaaacaattgaaccatggcttgatggaacttttaacggaaatggatttctgtatgacaaaaaatggggag 285  Q
     |||||||||||| ||||| || |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||    
T  6526496 atttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctttatgataaaaaatggggag 6526419  T

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Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 6472903 - 6473058
Alignment:
Q  11 aagcaaaggtataaaagaagaatcacatgatgaaattgtttcgtcgcttttaaaagatattgaaggtttaaattcatcagcaataacatcaattacttca 110  Q
    |||||||||| ||||||||||||||||||| |||||||||||  | |||| ||||||| ||||  || |||| |||||| | |||||| ||    | |||    
T  6472903 aagcaaaggtgtaaaagaagaatcacatgacgaaattgtttcagctctttcaaaagatgttgagagtctaaagtcatcaccgataacaaca---gcatca 6472999  T
Q  111 tcttacttctatggacaattgattgcaagagcagcaaggttagcattgatagctgaaga 169  Q
    |||||||| |||||| ||||||| ||||| || || ||||||||||||||||| |||||    
T  6473000 tcttacttttatggaaaattgatagcaagggctgcgaggttagcattgatagccgaaga 6473058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 289
Target Start/End: Complemental strand, 6465458 - 6465376
Alignment:
Q  207 tttttgaaggaaacaattgaaccatggcttgatggaacttttaacggaaatggatttctgtatgacaaaaaatggggaggaat 289  Q
    |||||||||||||| ||||| || |||||||||||||||||||| |||||||||||||| |||||   |||||||||||||||    
T  6465458 tttttgaaggaaactattgagccttggcttgatggaacttttaatggaaatggatttctctatgatggaaaatggggaggaat 6465376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 6528316 - 6528239
Alignment:
Q  209 tttgaaggaaacaattgaaccatggcttgatggaacttttaacggaaatggatttctgtatgacaaaaaatggggagg 286  Q
    ||||||||| |  ||||| || ||||||||||||||||| || || ||||||||||| ||||| ||||||||||||||    
T  6528316 tttgaaggagatgattgagccttggcttgatggaactttcaaaggtaatggatttctctatgataaaaaatggggagg 6528239  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 1841749 - 1841836
Alignment:
Q  11 aagcaaaggtataaaagaagaatcacatgatgaaattgtttcgtcgcttttaaaagatattgaaggtttaaattcatcagcaataaca 98  Q
    |||||||||| ||||||||||||  |||||||||||||||||  | ||||| ||| || |||||||||| || ||||| | |||||||    
T  1841749 aagcaaaggtgtaaaagaagaatttcatgatgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctgaaataaca 1841836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 6473120 - 6473175
Alignment:
Q  231 tggcttgatggaacttttaacggaaatggatttctgtatgacaaaaaatggggagg 286  Q
    ||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||||||    
T  6473120 tggctcgatggaacatttaatggaaatggatttctctatgataaaaaatggggagg 6473175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 6457495 - 6457415
Alignment:
Q  210 ttgaaggaaacaattgaaccatggcttgatggaacttttaacggaaatggatttctgtatgacaaaaaatggggaggaatc 290  Q
    ||||||||||| || || |||||| |  ||||||||||||||| |||||| ||||| |||||   ||||||||||||||||    
T  6457495 ttgaaggaaacgatcgagccatggttgaatggaacttttaacgaaaatggttttctttatgatggaaaatggggaggaatc 6457415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 289
Target Start/End: Original strand, 6520629 - 6520708
Alignment:
Q  210 ttgaaggaaacaattgaaccatggcttgatggaacttttaacggaaatggatttctgtatgacaaaaaatggggaggaat 289  Q
    ||||||||||| ||||| || |||||||||||||||||||  | |||||| ||||| ||||| ||||  ||||| |||||    
T  6520629 ttgaaggaaactattgagccttggcttgatggaacttttagtgaaaatggttttctatatgataaaagttggggtggaat 6520708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 6457585 - 6457535
Alignment:
Q  120 tatggacaattgattgcaagagcagcaaggttagcattgatagctgaagaa 170  Q
    |||||| ||||||| ||||| ||||||||||| | ||||||||||||||||    
T  6457585 tatggaaaattgatagcaagggcagcaaggttgggattgatagctgaagaa 6457535  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 289
Target Start/End: Original strand, 9665358 - 9665440
Alignment:
Q  207 tttttgaaggaaacaattgaaccatggcttgatggaacttttaacggaaatggatttctgtatgacaaaaaatggggaggaat 289  Q
    |||||||| ||||| |||||||| ||| ||||||||||||| || | ||||||||||||||||||  | ||||||||||||||    
T  9665358 tttttgaaagaaactattgaaccgtggtttgatggaactttcaaagaaaatggatttctgtatgatcagaaatggggaggaat 9665440  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 9665259 - 9665314
Alignment:
Q  114 tacttctatggacaattgattgcaagagcagcaaggttagcattgatagctgaaga 169  Q
    ||||| |||||| ||||||||||||||||||| ||| | |||||||||||||||||    
T  9665259 tacttttatggaaaattgattgcaagagcagctaggcttgcattgatagctgaaga 9665314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 3753881 - 3753957
Alignment:
Q  207 tttttgaaggaaacaattgaaccatggcttgatggaacttttaacggaaatggatttctgtatgacaaaaaatgggg 283  Q
    |||||||||||||| ||||| |||||| |  |||||||||| || || ||||| ||  ||||||| |||||||||||    
T  3753881 tttttgaaggaaactattgagccatggttgaatggaactttcaaagggaatggtttcttgtatgaaaaaaaatgggg 3753957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 289
Target Start/End: Original strand, 13536382 - 13536464
Alignment:
Q  207 tttttgaaggaaacaattgaaccatggcttgatggaacttttaacggaaatggatttctgtatgacaaaaaatggggaggaat 289  Q
    |||||||| ||||| |||||||| ||| ||||||||||||| || | ||||||||||||||||||  | ||||||||||||||    
T  13536382 tttttgaaagaaactattgaaccgtggtttgatggaactttcaaagaaaatggatttctgtatgatcagaaatggggaggaat 13536464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 13536283 - 13536338
Alignment:
Q  114 tacttctatggacaattgattgcaagagcagcaaggttagcattgatagctgaaga 169  Q
    ||||| |||||| ||||||||||||||||||| ||| | |||||||||||||||||    
T  13536283 tacttttatggaaaattgattgcaagagcagctaggcttgcattgatagctgaaga 13536338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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