View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18007_high_52 (Length: 295)

Name: NF18007_high_52
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18007_high_52
NF18007_high_52
[»] chr4 (1 HSPs)
chr4 (1-295)||(32266200-32266492)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 32266200 - 32266492
Alignment:
Q  1 tttgttgctaaaagaaaa-tccttcagagtttgctttctttcttgaatcgaactttgtatcatgatccaaatccttattcatcatccctgatttcttaaa 99  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32266200 tttgttgctaaaagaaaaatccttcagagtttgctttctttctcgaatcgaactttgtatcatgatccaaatccttattcatcatccctgatttcttaaa 32266299  T
Q  100 tatagttgttacattgttattgtatttgcttctacaatcatcaaatccagatttatctgcttccaccttaggcctcttgaattcatagtttggaacactt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32266300 tatagttgttacattgttattgtatttgcttctacaatcatcaaatccagatttatctgcttccaccttaggcctcttgaattcatagtttggaacactt 32266399  T
Q  200 gaatctacaaatttgattttctttgaaccatatctgaaatccctcgaatctgaattattcgaaacaccaccaatcccaaccattttcagcttcttt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||   |||||||||||||||||||||||||||||    
T  32266400 gaatctacaaatttgattttctttgaaccatatctgaaatccctcaaatctgaattattcgaaa---caccaatcccaaccattttcagcttcttt 32266492  T

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