View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_high_53 (Length: 295)
Name: NF18007_high_53
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_53 |
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| [»] scaffold0557 (1 HSPs) |
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| [»] scaffold0726 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 75 - 233
Target Start/End: Original strand, 18716963 - 18717121
Alignment:
| Q |
75 |
ttattgtcttcatttactaaccaaatcatannnnnnngttaaatttaaccatatattagaaaggtataaaaaatgcaccaacattaataatgacag-agt |
173 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18716963 |
ttattgtcttcatttactaaccaaatcatatttttt-gttaaatttaaccatatattagaaaggtataaaaaatgcaccaacattaataatgacagtagt |
18717061 |
T |
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| Q |
174 |
aaacaaaagagaattaaaaaatgatcacgtatattaacaaatgacccaaagaacttcttt |
233 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18717062 |
aaacaaaagagaattaaaaaatgatcacgtatattaacaaatgacccaaaaaacttcttt |
18717121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 75 - 232
Target Start/End: Original strand, 14465130 - 14465287
Alignment:
| Q |
75 |
ttattgtcttcatttactaaccaaatcatannnnnnngttaaatttaaccatatattagaaaggtataaaaaatgcaccaacattaataatgacag-agt |
173 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14465130 |
ttattgtcttcatttactaaccaaatcatatttttt-gttacatttgaccatatattagaaaggtataaaaaatgcaccaacattaataatgacagtagt |
14465228 |
T |
|
| Q |
174 |
aaacaaaagagaattaaaaaatgatcacgtatattaacaaatgacccaaagaacttctt |
232 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14465229 |
aaacaaaagaaaattaaaaaatgatcacgtatattaacaaatgacccaaaaaacttctt |
14465287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 75 - 232
Target Start/End: Complemental strand, 19110464 - 19110306
Alignment:
| Q |
75 |
ttattgtcttcatttactaaccaaatcatannnnnnngttaaatttaaccatatattagaaaggtataaaaaatgcaccaacattaataatgacag-agt |
173 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19110464 |
ttattgtcttcatttactaaccaaatcatatttttttgttacatttaaccatatattagaaaggtataaaaaatgcaccaacattaataatgacagtagt |
19110365 |
T |
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| Q |
174 |
aaacaaaagagaattaaaaaatgatcacgtatattaacaaatgacccaaagaacttctt |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
19110364 |
aaacaaaagagaattaaaaaatgatcacgtatattaacaaatgacccaaaaaaattctt |
19110306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 75 - 232
Target Start/End: Complemental strand, 45099453 - 45099293
Alignment:
| Q |
75 |
ttattgtcttcatttactaaccaaatcatannnnnnngttaaatttaaccatatat---tagaaaggtataaaaaatgcaccaacattaataatgacag- |
170 |
Q |
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|||||||||| ||||||||||| ||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45099453 |
ttattgtctttatttactaacccaatcatatttttt-gttacatttaaccaaatatatttagaaaggtataaaaaatgcaccaacattaataatgacagt |
45099355 |
T |
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| Q |
171 |
agtaaacaaaagagaattaaaaaatgatcacgtatattaacaaatgacccaaagaacttctt |
232 |
Q |
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| ||||||||||| |||||||| |||||||||||||||||||||||| | ||| |||||||| |
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| T |
45099354 |
aataaacaaaagacaattaaaacatgatcacgtatattaacaaatgatctaaaaaacttctt |
45099293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 75 - 232
Target Start/End: Complemental strand, 7963272 - 7963114
Alignment:
| Q |
75 |
ttattgtcttcatttactaaccaaatcatannnnnnngttaaatttaaccatatattagaaaggtataaaaaa-tgcaccaacattaataatgacag-ag |
172 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
7963272 |
ttattgtcttcatttactaaccagatcatatttttt-gttacatttaaccatatattagaaaggtataaaaaaatgcaccaacattaataatgacagtag |
7963174 |
T |
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| Q |
173 |
taaacaaaagagaattaaaaaatgatcacgtatattaacaaatgacccaaagaacttctt |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7963173 |
taaacaaaagagaattaaaaaatgatcacgtatattaacaaatgacccaaaaaacttctt |
7963114 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 75 - 223
Target Start/End: Original strand, 8131 - 8279
Alignment:
| Q |
75 |
ttattgtcttcatttactaaccaaatcatannnnnnngttaaatttaaccatatattagaaaggtataaaaaatgcaccaacattaataatgacag-agt |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
8131 |
ttattgtcttcatttactaaccaaatcatatttttt-gttacatttaaccatatattagaaaggtgtaaaaaatgcaccaacattaataatgacagtagt |
8229 |
T |
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| Q |
174 |
aaacaaaagagaattaaaaaatgatcacgtatattaacaaatgacccaaa |
223 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
8230 |
aaacaaaagataattaaaaaatgatcacgtatattaacaaattacccaaa |
8279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 75 - 223
Target Start/End: Complemental strand, 29467105 - 29466957
Alignment:
| Q |
75 |
ttattgtcttcatttactaaccaaatcatannnnnnngttaaatttaaccatatattagaaaggtataaaaaatgcaccaacattaataatgacag-agt |
173 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||| |
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|
| T |
29467105 |
ttattgtcttcatttactaatcaaatcatatttttt-gttatatttaaccatatattaaaaaggtataaaaaatgcaccaacattaacaatgacagtagt |
29467007 |
T |
|
| Q |
174 |
aaacaaaagagaattaaaaaatgatcacgtatattaacaaatgacccaaa |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29467006 |
aaacaaaagagaattaaaaaatgatcacgtatattaacaaatgacccaaa |
29466957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 79 - 229
Target Start/End: Complemental strand, 4203 - 4053
Alignment:
| Q |
79 |
tgtcttcatttactaaccaaatcatannnnnnngttaaatttaaccatatattagaaaggtataaaaaatgcaccaacattaataatgacag-agtaaac |
177 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4203 |
tgtcttcatttactaaccaaatcatatttttt-gttacattaaacctaatattagaaaggtataaaaaatgcaccaacattaataatgacagtagtaaac |
4105 |
T |
|
| Q |
178 |
aaaagagaattaaaaaatgatcacgtatattaacaaatgacccaaagaactt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
4104 |
aaaagagaattaaaaaatgatcacgtatattaacaaatgacccaaaaaactt |
4053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 75 - 206
Target Start/End: Complemental strand, 12227925 - 12227791
Alignment:
| Q |
75 |
ttattgtcttcatttactaaccaaatcatannnnnnngttaaatttaaccatatat---tagaaaggtataaaaaatgcaccaacattaataatgaca-g |
170 |
Q |
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|||||||||| ||||||||||||||||||| |||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12227925 |
ttattgtctttatttactaaccaaatcatatatttt-gttacatttaaccaaatatatttagaaaggtataaaaaatgcaccaacattaataatgacatt |
12227827 |
T |
|
| Q |
171 |
agtaaacaaaagagaattaaaaaatgatcacgtata |
206 |
Q |
| |
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||||||||||||| |||||||| |||||||| |||| |
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|
| T |
12227826 |
agtaaacaaaagacaattaaaacatgatcacatata |
12227791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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