View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18007_high_55 (Length: 287)
Name: NF18007_high_55
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_55 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 29447723 - 29447455
Alignment:
| Q |
19 |
agttaagtcattgaaaaggttagttagtggtgataccaacttggggaatcaagctagtgagtgtattcgaggtttaagggttcctttgaatcaagacgat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29447723 |
agttaagtcattgaaaaggttagttagtggtgataccaacttggggaatcaagctagtgagtgtattcgaggtttaagggttcctttgaatctagacgat |
29447624 |
T |
|
| Q |
119 |
cttactaagaagccttccatgtttagttctcaaacaaatagggaaagtttggtccaaaaatcttcagtagcaagttggtctaagcctgatcagaatcata |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29447623 |
cttactaagaagccttccatgtttagttctcaaacaaatagggaaagtttggtccgaaaatcttcagtagcaagttggtctaagcctgatcagaatcata |
29447524 |
T |
|
| Q |
219 |
aaggaaggaattctgaatctttccatgcacataagttagcaagatccaaaccctccattgcgacgagag |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29447523 |
aaggaaggaattctgaatctttccatgcacataagttagcaagatccaaaccctccattgcgacgagag |
29447455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University