View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_high_6 (Length: 548)
Name: NF18007_high_6
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 173 - 534
Target Start/End: Original strand, 3391649 - 3392010
Alignment:
| Q |
173 |
aaaggcaatagagagctattttcacaaatttgtcttttgaaaagtttttcttctaggtttagccgcttgcgcgcataagatggaggaagggtgggttggt |
272 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
3391649 |
aaaggcaatagagagctattttcacaaatttgtctgttgaaaagtttttcttctaggtttagcctcttgcatgcataagatggaggaagggtgggttggt |
3391748 |
T |
|
| Q |
273 |
gttttgaacgttcatcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggaccaatcttactatgcttagtcatatta |
372 |
Q |
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|||||||| |||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
3391749 |
gttttgaatgttcgtcaacaacatgtttgtcaactacgtactttgtttcatttggagcagatcagcgtttggaccaattttactaagcttagtcatatta |
3391848 |
T |
|
| Q |
373 |
tgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtcaatcttatagtggacatact |
472 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3391849 |
tgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtcaatcttatagtggacatact |
3391948 |
T |
|
| Q |
473 |
tccttccaaggttcagttgaatatgaatatgattcctcctcaagaaagatgcattttttctg |
534 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3391949 |
tccttccaaggttcggttgaatatgaatatgattcctcctgaagaaagatgcattttttctg |
3392010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 190 - 534
Target Start/End: Original strand, 3298773 - 3299117
Alignment:
| Q |
190 |
attttcacaaatttgtcttttgaaaagtttttcttctaggtttagccgcttgcgcgcataagatggaggaagggtgggttggtgttttgaacgttcatca |
289 |
Q |
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| T |
3298773 |
attttcacaaatttgtctgttgaaaagtttttcttctaggtttagccgcttgcgtgcataagatggaggaagggtgggttggtgttttgaatgttcgtca |
3298872 |
T |
|
| Q |
290 |
acaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggaccaatcttactatgcttagtcatattatgagaatcaaaaacaaa |
389 |
Q |
| |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3298873 |
acaacatgtttgtcaactacgtactttgtttcatttggagcagatcagcgtttggaccaatcttactatgcttagtcatattatgagaatcaaaaacaaa |
3298972 |
T |
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| Q |
390 |
atcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtcaatcttatagtggacatacttccttccaaggttcagt |
489 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3298973 |
atcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtcaatcttatagtggacatacttccttccaaggttcggt |
3299072 |
T |
|
| Q |
490 |
tgaatatgaatatgattcctcctcaagaaagatgcattttttctg |
534 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
3299073 |
tgaatatgaatatgattcctcctgaagaaagatgcattttttctg |
3299117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 249 - 489
Target Start/End: Complemental strand, 1164442 - 1164208
Alignment:
| Q |
249 |
aagatggaggaagggtgggttggtgttttgaacgttcatcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggacca |
348 |
Q |
| |
|
|||||||||||||| ||| || |||| |||| |||| |||||||||| ||| | ||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
1164442 |
aagatggaggaaggatggcgtgctgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggagcaggtcagcgtttggaacc |
1164343 |
T |
|
| Q |
349 |
atcttactatgcttagtcatattatgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgt |
448 |
Q |
| |
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||||| ||| || | || || ||||||| || |||| ||| |||| |||||||||||||| |||||||||||||||||||||| |||| || |
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| T |
1164342 |
atcttggtatcgttggaaattttcggagaatcgaatacaacatcaatga------aggtttgtctttctatttcaatagcttatctgatgctgcggaagt |
1164249 |
T |
|
| Q |
449 |
tgtcaatcttatagtggacatacttccttccaaggttcagt |
489 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||| |
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| T |
1164248 |
tgtcaatcttatagtggacatacttcctgcccaggttcagt |
1164208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 249 - 489
Target Start/End: Original strand, 1849324 - 1849558
Alignment:
| Q |
249 |
aagatggaggaagggtgggttggtgttttgaacgttcatcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggacca |
348 |
Q |
| |
|
|||||||||||||||| || |||| |||| |||| |||||||||| ||| | ||||||||||||||||||||||||||||| ||||||||| || | |
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| T |
1849324 |
aagatggaggaagggttttgtgctgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggagcaggtcagcgtttcgaacc |
1849423 |
T |
|
| Q |
349 |
atcttactatgcttagtcatattatgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgt |
448 |
Q |
| |
|
|||| ||| ||| | ||| |||||||||| |||| |||||| ||||||||||||||||||||||||||| ||||||||||| || | || |
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| T |
1849424 |
atctcggtatccttgaaaagattcggagaatcaaatacaacatcgat------gaaggtttgtctttctgtttcaatagcatatctgatgctgcgaaagt |
1849517 |
T |
|
| Q |
449 |
tgtcaatcttatagtggacatacttccttccaaggttcagt |
489 |
Q |
| |
|
||||||||||||| || |||||||||| || |||||||| |
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| T |
1849518 |
tgtcaatcttataacgggcatacttcctgccctggttcagt |
1849558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 342
Target Start/End: Original strand, 39879188 - 39879258
Alignment:
| Q |
272 |
tgttttgaacgttcatcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgttt |
342 |
Q |
| |
|
|||| |||| |||| |||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |
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|
| T |
39879188 |
tgttgtgaatgttcgtcaacaacatgtttgtcagctgcgtactttctttcatttggagcagatcagcgttt |
39879258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 342
Target Start/End: Original strand, 40411893 - 40411963
Alignment:
| Q |
272 |
tgttttgaacgttcatcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgttt |
342 |
Q |
| |
|
|||| |||| |||| |||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |
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|
| T |
40411893 |
tgttgtgaatgttcgtcaacaacatgtttgtcagctgcgtactttctttcatttggagcagatcagcgttt |
40411963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 249 - 358
Target Start/End: Original strand, 39725765 - 39725874
Alignment:
| Q |
249 |
aagatggaggaagggtgggttggtgttttgaacgttcatcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggacca |
348 |
Q |
| |
|
||||||||| |||||||| | |||| |||| |||| |||||||||| ||| |||||| |||||| | |||||||||||||||||||||||| ||||| |
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| T |
39725765 |
aagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgacca |
39725864 |
T |
|
| Q |
349 |
atcttactat |
358 |
Q |
| |
|
||||| |||| |
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|
| T |
39725865 |
atcttgctat |
39725874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 353
Target Start/End: Original strand, 38987043 - 38987147
Alignment:
| Q |
249 |
aagatggaggaagggtgggttggtgttttgaacgttcatcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggacca |
348 |
Q |
| |
|
||||||||| |||||||| | |||| |||| |||| |||||||||| ||| |||||| |||||| | |||||||||||||||||||||||| ||||| |
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|
| T |
38987043 |
aagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgacca |
38987142 |
T |
|
| Q |
349 |
atctt |
353 |
Q |
| |
|
||||| |
|
|
| T |
38987143 |
atctt |
38987147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 3391534 - 3391567
Alignment:
| Q |
66 |
cacttttattctaatccgtaacaaaaacatgatc |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
3391534 |
cacttttattctaatccgtaacaaaaacatgatc |
3391567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 25912999 - 25912945
Alignment:
| Q |
287 |
tcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtt |
341 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
25912999 |
tcaacaacatgtttgtcaactgcgtactttctttcatttggagcagatcagcgtt |
25912945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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