View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_high_61 (Length: 267)
Name: NF18007_high_61
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_61 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 5 - 252
Target Start/End: Complemental strand, 35980686 - 35980439
Alignment:
| Q |
5 |
atgaaatagcagcaacatatattaacatatgttttctaatactaagaagcaaagtgatatatgaggattcttaattacatagcaaagtcaatcattgtca |
104 |
Q |
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| T |
35980686 |
atgaaatagcagcaacatatattaacatatgttttctaatactaagaagcaaagtgatatatgaggattcttaattacatagcaaagtcaatcattgtca |
35980587 |
T |
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| Q |
105 |
agtgtacaatgatcccacatatcaggaaactactatcaaattaaactcctattctagaaaggatgtaaaatggacagatagctagcataattgaaggaac |
204 |
Q |
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| T |
35980586 |
agtgtacaatgatcccacatatcaggaaactactatcaaattaaactcctattctagaaaggatgtaaaatggacagatagctagcataattgaaggaac |
35980487 |
T |
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| Q |
205 |
aatttttaatcttctaaagccttattcctcataactcttcatataatc |
252 |
Q |
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| T |
35980486 |
aatttttaatcttctaaagccttattcctcataactcttcatataatc |
35980439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 74 - 236
Target Start/End: Complemental strand, 35970274 - 35970120
Alignment:
| Q |
74 |
cttaattacatagcaaagtcaa-tcattgtcaagtgtacaatgatcccacatatcaggaaactactatcaaattaaactcctattctagaaaggatgtaa |
172 |
Q |
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| T |
35970274 |
cttaattacacatcaaagtcacgtcattgtcaagtgtacaatgatcccaca---------actactaacaaattagactcctattctaagaatgatataa |
35970184 |
T |
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| Q |
173 |
aatggacagatagctagcataattgaaggaacaatttttaatcttctaaagccttattcctcat |
236 |
Q |
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| T |
35970183 |
aacggccagatagctggcataactgaaggaacaatttttattcttttagaaccttattcttcat |
35970120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 35970354 - 35970293
Alignment:
| Q |
8 |
aaatagcagcaacatatattaa-catatgttttctaatactaagaagcaaagtgatatatga |
68 |
Q |
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|||||||||||||||| ||| | |||||||||||||||| | | ||||||||||||| |||| |
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| T |
35970354 |
aaatagcagcaacatagatttagcatatgttttctaatatttaaaagcaaagtgatacatga |
35970293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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