View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_high_64 (Length: 261)
Name: NF18007_high_64
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_64 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 5005890 - 5006120
Alignment:
| Q |
17 |
acaaatatagtttacattcgattattctattttctcatatcatcattattggtatggacatgttagtgtccatgtcaatattctacttttgccattgtaa |
116 |
Q |
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| T |
5005890 |
acaaatatagtttacattcgattattctattttctcatatcatcattattggtatggacatgttagtgtccatgtcaatgttctacttttgccattttaa |
5005989 |
T |
|
| Q |
117 |
ctatgtgcgtgactttgatatcatcttgtatttttagacattattgtgagctattcaagtgtgtaaaatgtacatgtaacttataagaaataaagtttga |
216 |
Q |
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| T |
5005990 |
ctatgtgcgtgactttgatattatcttgtatttttagacattattgtcagctattcaagtgtgtaaaatgtacatgtaacttataagaaataaagtttga |
5006089 |
T |
|
| Q |
217 |
gaccttgtttacagctccttggggttcatct |
247 |
Q |
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| T |
5006090 |
gaccttgtttacagctccttgggattcatct |
5006120 |
T |
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