View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18007_high_69 (Length: 249)
Name: NF18007_high_69
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_69 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 26986912 - 26986825
Alignment:
| Q |
143 |
ttgaaggaactgaaaaaagttattagtgactcgtttagtatatnnnnnnnntgttgaattggagggcattcataaccaaaacaaagat |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26986912 |
ttgaaggaactgaaaaaagttattagtgactcgtttagtatataaaaaaaatgttgaattggagggcattcataaccaaaacaaagat |
26986825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 26987050 - 26986997
Alignment:
| Q |
7 |
gagtgagaagaatagttattgaggaagaggtttttagaagcacactttttcctc |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26987050 |
gagtgagaagaatagttattgaggaagaggtttttagaagcacactttttcctc |
26986997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University