View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18007_high_7 (Length: 539)
Name: NF18007_high_7
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 15 - 426
Target Start/End: Complemental strand, 51707261 - 51706849
Alignment:
| Q |
15 |
caaaggccacagttgcatcaatacaaggtgtttcttcaatccaagcatcataagaagaaatagaaaatgtatattttgctaaatagtgagcaacttgatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51707261 |
caaaggccacagttgcatcaatacaaggtgtttcttcaatccaagcatcataagaagaaatagaaaatgtatattttgctaaatagtgagcaacttgatt |
51707162 |
T |
|
| Q |
115 |
agcttctattgtaccgaattttttggcactccaacgattgcacctaaagtatgatgcacgttgctgaatatcatcatgatattttgaaaggaatgacaaa |
214 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51707161 |
agcttctactgtaacgaattttttggcactccaacgattgcacctaaagtatgatgcacgttgctgaatatcatcatgatattttgaaaggaatgacaaa |
51707062 |
T |
|
| Q |
215 |
aaggaaattggtaacctataatttatacctaacgtcaaaacaattgaagaaagagcttcaataattatgtgggttgctgtaaaacgcg-tttccataaca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
51707061 |
aaggaaattggtaacctataatttatacctaacgtcaaaacaattgaagaaagagcttcaataattatgtggtttgctgtaaaaagcgttttccataaca |
51706962 |
T |
|
| Q |
314 |
taatagcatggtggacattttgtcatcatcatatgtaaacatgaaaatcacattgaattgaaagataaaactgaaacaagtagcgagtatattttaacag |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51706961 |
taatagcatggtggacattttgtcatcatcatatgtaaacatgaaaatcacattgaattgaaagataaaactgaaacaagtagcgagtatattttaacag |
51706862 |
T |
|
| Q |
414 |
tacaatcatagtc |
426 |
Q |
| |
|
||||||||||||| |
|
|
| T |
51706861 |
tacaatcatagtc |
51706849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 662796 - 662714
Alignment:
| Q |
39 |
aaggtgtttcttcaatccaagcatcataagaagaaatagaaaatgtatattttgctaaatagtgagcaacttgattagcttct |
121 |
Q |
| |
|
|||| ||||||| ||||||| | ||| |||||||||||||||| |||||||||||||||||| | | |||||||||||||| |
|
|
| T |
662796 |
aaggcgtttctttaatccaaataacatcagaagaaatagaaaatacatattttgctaaatagtgtggagcttgattagcttct |
662714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 19119648 - 19119741
Alignment:
| Q |
28 |
tgcatcaatacaaggtgtttcttcaatccaagcatcataagaagaaatagaaaatgtatattttgctaaatagtgagcaacttgattagcttct |
121 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||| ||| ||| ||||||| | || || |||| |||||||||| || |||||||||||||| |
|
|
| T |
19119648 |
tgcatctatacaaggtatttcttcaatccaagcaacatcggaataaatagagattgcatgtttttctaaatagtggccagcttgattagcttct |
19119741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 4523899 - 4523818
Alignment:
| Q |
39 |
aaggtgtttcttcaatccaagcatcataagaagaaatagaaaatgtatattttgctaaatagtgagcaacttgattagcttct |
121 |
Q |
| |
|
||||||||| |||||||||| || || | || ||||| ||| || ||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
4523899 |
aaggtgtttattcaatccaaacaacaacaaaa-aaataaaaattgcatattttgcaaaatagtgagcagcttgattagcttct |
4523818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 47488806 - 47488913
Alignment:
| Q |
17 |
aaggccacagttgcatcaatacaag---gtgtttcttcaatccaagcatcataagaagaaatagaaaatgtatattttgctaaatagtgagcaacttgat |
113 |
Q |
| |
|
||||||||| |||||||||||||| || ||| |||||||||| ||||||||||||||||||||| || | |||||| |||| | | |||| ||||| |
|
|
| T |
47488806 |
aaggccacaactgcatcaatacaagaaggtattttttcaatccaaacatcataagaagaaatagaaattgcacattttgttaaacatttagcagtttgat |
47488905 |
T |
|
| Q |
114 |
tagcttct |
121 |
Q |
| |
|
|||||||| |
|
|
| T |
47488906 |
tagcttct |
47488913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University