View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18007_high_71 (Length: 243)

Name: NF18007_high_71
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18007_high_71
NF18007_high_71
[»] chr7 (34 HSPs)
chr7 (11-124)||(38044197-38044310)
chr7 (11-129)||(22343356-22343474)
chr7 (11-129)||(41915736-41915854)
chr7 (11-124)||(7727906-7728019)
chr7 (11-125)||(8238211-8238326)
chr7 (11-124)||(40846100-40846213)
chr7 (11-126)||(32564413-32564528)
chr7 (24-125)||(19329841-19329942)
chr7 (24-116)||(3784003-3784095)
chr7 (24-116)||(7389397-7389489)
chr7 (24-116)||(36361913-36362005)
chr7 (24-123)||(35522877-35522976)
chr7 (19-126)||(39255919-39256025)
chr7 (24-126)||(38267038-38267140)
chr7 (24-108)||(3694383-3694467)
chr7 (24-116)||(4999514-4999606)
chr7 (24-116)||(8080383-8080475)
chr7 (56-124)||(18207180-18207248)
chr7 (24-116)||(36362034-36362126)
chr7 (58-116)||(10343597-10343655)
chr7 (54-116)||(19436217-19436279)
chr7 (34-124)||(46374812-46374902)
chr7 (24-125)||(21234400-21234501)
chr7 (24-125)||(35137532-35137633)
chr7 (24-116)||(38837225-38837317)
chr7 (24-116)||(3434570-3434662)
chr7 (34-124)||(26296644-26296734)
chr7 (60-129)||(2318279-2318348)
chr7 (54-116)||(40957715-40957777)
chr7 (24-116)||(32951493-32951585)
chr7 (59-127)||(41423679-41423747)
chr7 (56-94)||(16374856-16374894)
chr7 (34-124)||(46033811-46033901)
chr7 (59-124)||(36208173-36208238)
[»] chr1 (31 HSPs)
chr1 (127-220)||(41131532-41131625)
chr1 (11-126)||(50590987-50591102)
chr1 (11-124)||(5958987-5959100)
chr1 (11-126)||(41608480-41608595)
chr1 (24-124)||(49811527-49811627)
chr1 (11-125)||(47748442-47748555)
chr1 (20-116)||(2581923-2582019)
chr1 (26-126)||(48716284-48716384)
chr1 (26-116)||(38632323-38632413)
chr1 (24-116)||(3000327-3000419)
chr1 (24-126)||(9474876-9474978)
chr1 (24-125)||(27564735-27564836)
chr1 (24-124)||(32813247-32813347)
chr1 (24-116)||(38595162-38595254)
chr1 (19-104)||(11152373-11152458)
chr1 (24-125)||(47452320-47452421)
chr1 (19-116)||(51898678-51898775)
chr1 (24-116)||(8346388-8346480)
chr1 (24-116)||(41758813-41758905)
chr1 (24-116)||(44548376-44548468)
chr1 (11-86)||(44332358-44332433)
chr1 (19-125)||(3302528-3302634)
chr1 (11-124)||(37926425-37926538)
chr1 (35-104)||(45044571-45044640)
chr1 (24-116)||(43140-43232)
chr1 (59-123)||(44453980-44454044)
chr1 (24-116)||(50630466-50630558)
chr1 (58-116)||(26274440-26274498)
chr1 (56-125)||(37649197-37649266)
chr1 (24-125)||(26440733-26440834)
chr1 (56-116)||(34340071-34340130)
[»] chr6 (15 HSPs)
chr6 (11-126)||(15508011-15508126)
chr6 (11-124)||(15990029-15990142)
chr6 (11-124)||(30341347-30341460)
chr6 (11-126)||(4231546-4231661)
chr6 (24-116)||(32869686-32869778)
chr6 (24-125)||(17598553-17598654)
chr6 (24-116)||(22880658-22880750)
chr6 (24-108)||(31109400-31109484)
chr6 (11-116)||(28536475-28536578)
chr6 (24-124)||(31110761-31110859)
chr6 (24-129)||(31976243-31976348)
chr6 (54-116)||(29857835-29857897)
chr6 (24-116)||(6209465-6209557)
chr6 (24-103)||(11427639-11427718)
chr6 (59-125)||(31953065-31953131)
[»] chr8 (30 HSPs)
chr8 (11-124)||(16383377-16383490)
chr8 (11-124)||(24307780-24307893)
chr8 (11-124)||(34307216-34307329)
chr8 (11-124)||(30479461-30479574)
chr8 (11-124)||(16056388-16056501)
chr8 (11-124)||(32032725-32032837)
chr8 (24-129)||(15048182-15048286)
chr8 (24-126)||(40423943-40424045)
chr8 (24-125)||(504121-504222)
chr8 (24-116)||(1179940-1180032)
chr8 (24-116)||(14547930-14548022)
chr8 (24-125)||(15197332-15197433)
chr8 (24-125)||(23122597-23122698)
chr8 (24-116)||(12831055-12831147)
chr8 (44-124)||(24307629-24307709)
chr8 (24-122)||(10621087-10621185)
chr8 (11-124)||(17443825-17443938)
chr8 (19-134)||(37038469-37038584)
chr8 (19-124)||(10284626-10284731)
chr8 (24-125)||(34012296-34012397)
chr8 (54-116)||(5957838-5957900)
chr8 (19-105)||(8841427-8841513)
chr8 (54-124)||(14055622-14055692)
chr8 (19-116)||(42221523-42221620)
chr8 (24-125)||(43414581-43414682)
chr8 (59-125)||(38229428-38229493)
chr8 (54-116)||(44507117-44507179)
chr8 (59-124)||(15258964-15259029)
chr8 (56-125)||(20074966-20075035)
chr8 (24-116)||(4854863-4854955)
[»] chr5 (25 HSPs)
chr5 (11-124)||(3921252-3921365)
chr5 (11-124)||(2252155-2252268)
chr5 (54-128)||(35785195-35785269)
chr5 (14-124)||(39688887-39688997)
chr5 (24-125)||(40145406-40145507)
chr5 (24-116)||(18520884-18520976)
chr5 (24-125)||(28177774-28177875)
chr5 (24-116)||(13811660-13811752)
chr5 (26-125)||(42414304-42414403)
chr5 (15-125)||(14831813-14831923)
chr5 (54-124)||(35943922-35943992)
chr5 (35-124)||(6679698-6679787)
chr5 (24-116)||(2740282-2740374)
chr5 (28-124)||(15409614-15409710)
chr5 (24-116)||(36732942-36733034)
chr5 (11-125)||(26720515-26720629)
chr5 (11-125)||(26990264-26990378)
chr5 (24-125)||(33149638-33149739)
chr5 (11-124)||(31008988-31009101)
chr5 (56-101)||(39557549-39557594)
chr5 (65-116)||(36875644-36875695)
chr5 (56-103)||(33825356-33825403)
chr5 (53-124)||(38296203-38296274)
chr5 (61-116)||(10356642-10356698)
chr5 (56-104)||(16327921-16327969)
[»] chr4 (35 HSPs)
chr4 (11-124)||(55079700-55079814)
chr4 (11-124)||(19670703-19670816)
chr4 (11-124)||(47986208-47986321)
chr4 (11-125)||(18924482-18924596)
chr4 (11-124)||(32766958-32767071)
chr4 (11-106)||(17983730-17983825)
chr4 (11-129)||(50813879-50813997)
chr4 (11-124)||(55475191-55475304)
chr4 (11-124)||(29547946-29548059)
chr4 (11-116)||(29589727-29589831)
chr4 (11-124)||(44536733-44536845)
chr4 (24-116)||(41236355-41236447)
chr4 (11-101)||(29977908-29977998)
chr4 (11-124)||(8343150-8343263)
chr4 (19-116)||(29239894-29239991)
chr4 (11-126)||(11511449-11511564)
chr4 (24-127)||(31910189-31910292)
chr4 (19-116)||(50052423-50052520)
chr4 (24-116)||(48183049-48183141)
chr4 (24-126)||(6034042-6034144)
chr4 (24-116)||(480447-480539)
chr4 (26-126)||(54473535-54473635)
chr4 (19-125)||(3481653-3481759)
chr4 (24-116)||(42044367-42044459)
chr4 (24-108)||(23608251-23608335)
chr4 (24-124)||(28480268-28480368)
chr4 (24-124)||(28481143-28481243)
chr4 (24-124)||(28482018-28482118)
chr4 (57-125)||(40574778-40574846)
chr4 (19-126)||(50526166-50526273)
chr4 (19-124)||(48647721-48647826)
chr4 (24-116)||(29234245-29234337)
chr4 (24-108)||(24995107-24995191)
chr4 (24-76)||(41823930-41823982)
chr4 (65-126)||(29535375-29535436)
[»] chr2 (36 HSPs)
chr2 (11-125)||(43490120-43490234)
chr2 (11-124)||(45097722-45097835)
chr2 (11-106)||(2997474-2997569)
chr2 (11-124)||(38732354-38732467)
chr2 (24-125)||(28381655-28381756)
chr2 (11-124)||(13365351-13365466)
chr2 (24-125)||(40613902-40614003)
chr2 (24-116)||(9058488-9058580)
chr2 (24-116)||(19930820-19930912)
chr2 (54-129)||(4060680-4060755)
chr2 (24-116)||(10249382-10249474)
chr2 (24-116)||(28863463-28863555)
chr2 (24-116)||(32505648-32505740)
chr2 (54-126)||(40701476-40701548)
chr2 (19-116)||(33436095-33436192)
chr2 (24-116)||(7465735-7465827)
chr2 (18-125)||(27864703-27864810)
chr2 (24-125)||(13438342-13438443)
chr2 (24-116)||(17473028-17473120)
chr2 (24-124)||(38273142-38273242)
chr2 (24-124)||(42257193-42257293)
chr2 (26-124)||(2533124-2533221)
chr2 (19-129)||(33436206-33436316)
chr2 (54-116)||(38882844-38882905)
chr2 (59-124)||(26891539-26891604)
chr2 (24-116)||(5574488-5574580)
chr2 (24-116)||(30915471-30915563)
chr2 (59-126)||(17820039-17820106)
chr2 (11-74)||(3034970-3035033)
chr2 (50-124)||(15428766-15428840)
chr2 (19-116)||(20700823-20700920)
chr2 (63-108)||(3439995-3440040)
chr2 (53-98)||(12415394-12415438)
chr2 (53-98)||(12427454-12427498)
chr2 (55-116)||(17823792-17823853)
chr2 (24-124)||(36168836-36168936)
[»] chr3 (34 HSPs)
chr3 (11-130)||(45058540-45058658)
chr3 (11-102)||(36331316-36331407)
chr3 (24-125)||(53982010-53982111)
chr3 (24-124)||(47531865-47531965)
chr3 (24-126)||(33644198-33644300)
chr3 (54-116)||(54868925-54868987)
chr3 (19-116)||(8076401-8076498)
chr3 (24-125)||(26141532-26141633)
chr3 (24-116)||(17470413-17470505)
chr3 (24-116)||(27714891-27714983)
chr3 (24-116)||(31456697-31456789)
chr3 (24-116)||(49607422-49607514)
chr3 (24-116)||(52629308-52629400)
chr3 (54-116)||(11095383-11095445)
chr3 (62-124)||(36331416-36331478)
chr3 (11-112)||(13898042-13898143)
chr3 (44-124)||(11347942-11348022)
chr3 (24-124)||(41189764-41189864)
chr3 (19-113)||(26754706-26754800)
chr3 (54-124)||(33118881-33118951)
chr3 (54-116)||(36707454-36707516)
chr3 (11-121)||(42823114-42823224)
chr3 (11-116)||(14623826-14623931)
chr3 (24-116)||(48587091-48587183)
chr3 (24-126)||(20764915-20765017)
chr3 (19-116)||(30801728-30801825)
chr3 (24-124)||(11907371-11907471)
chr3 (24-124)||(51419360-51419460)
chr3 (51-116)||(24699981-24700046)
chr3 (54-116)||(9563007-9563069)
chr3 (11-116)||(25395320-25395425)
chr3 (11-116)||(35536634-35536739)
chr3 (19-124)||(48375701-48375806)
chr3 (24-116)||(35093593-35093685)
[»] scaffold0018 (1 HSPs)
scaffold0018 (11-111)||(152511-152611)
[»] scaffold0321 (1 HSPs)
scaffold0321 (54-124)||(10139-10209)
[»] scaffold0237 (1 HSPs)
scaffold0237 (54-116)||(4037-4099)
[»] scaffold1268 (1 HSPs)
scaffold1268 (54-125)||(959-1030)
[»] scaffold1267 (1 HSPs)
scaffold1267 (54-125)||(959-1030)
[»] scaffold0316 (1 HSPs)
scaffold0316 (11-101)||(17077-17167)


Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 38044310 - 38044197
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38044310 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggctacatgtcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgttt 38044211  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  38044210 atgtatcataactc 38044197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 22343474 - 22343356
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || ||||||||||  || |||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  22343474 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgttt 22343375  T
Q  111 atgtatgataactcaatta 129  Q
    |||||| ||||||| ||||    
T  22343374 atgtatcataactctatta 22343356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 41915854 - 41915736
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || ||||||||||| || |||||||||||||||| | ||||||| |||||||||||||||||||||||||    
T  41915854 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgttt 41915755  T
Q  111 atgtatgataactcaatta 129  Q
    |||||| ||||||| ||||    
T  41915754 atgtatcataactctatta 41915736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 7728019 - 7727906
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || ||||||||| | || |||||||||||| |||| ||||||||||||||||| ||||||||||||||||    
T  7728019 gagaagaagaaacagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttatgtgaatgtcaagaggtgtattaccacctaagggtgttt 7727920  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  7727919 atgtatcataactc 7727906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 8238326 - 8238211
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccaccta-agggtgtt 109  Q
    |||||||||||| |||||||||||||||| || ||||||||| |||| |||||||||||||||||| ||||||  |||||||||||||||| ||||||||    
T  8238326 gagaagaagaaagagaaagtgtacttgtgcggggtccatatgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctacagggtgtt 8238227  T
Q  110 tatgtatgataactca 125  Q
    ||||||| ||||||||    
T  8238226 tatgtatcataactca 8238211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 40846100 - 40846213
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||| ||||| || ||||||||  |||| ||| |||||||||||||||||||||| ||||||||||||||||||| |||||    
T  40846100 gagaagaagaaagagaaagtgtatttgtgcggggtccatataactacatgttagatttttgtgtggatgtcaaggggtgtattgccacctaaggatgttt 40846199  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  40846200 atgtatcataactc 40846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 32564413 - 32564528
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||| ||||| || |||||||| || || |||||||||||||||||| ||||||| ||||||||||||||||||  |||||    
T  32564413 gagaagaagaaagagaaagtgtatttgtgcggggtccatatagccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgttt 32564512  T
Q  111 atgtatgataactcaa 126  Q
    |||||| |||||||||    
T  32564513 atgtatcataactcaa 32564528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 19329942 - 19329841
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| || |||||  ||  |||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||||| || |||    
T  19329942 agaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattact 19329843  T
Q  124 ca 125  Q
    ||    
T  19329842 ca 19329841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 3784095 - 3784003
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| ||  ||||  || ||||||||||||||||||||||| |||||| || ||||||||||||||||||||| |||||||    
T  3784095 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtat 3784003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 7389489 - 7389397
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| ||||||   |||||||||||||||||||||| |||||||    
T  7389489 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtat 7389397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 36361913 - 36362005
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| ||||||  | ||||||||||||||||||||| |||||||    
T  36361913 agaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtat 36362005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 35522976 - 35522877
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| ||  |||||||||| ||||||||||||||||||||| ||| ||  ||||||||||||| ||||| ||| ||||||| ||||||    
T  35522976 agaaagtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcataact 35522877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 39255919 - 39256025
Alignment:
Q  19 gaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatga 118  Q
    |||| ||||||||| |||||| ||||||||  || | ||||||||||||||||| ||| | ||||| ||||||||||||||||||| ||| ||||||| |    
T  39255919 gaaagagaaagtgttcttgtgtggagtccacgtgcc-acgtgtcagatttttgtatgggtatcaagtggtgtattgccacctaaggttgtctatgtatca 39256017  T
Q  119 taactcaa 126  Q
    ||||||||    
T  39256018 taactcaa 39256025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 38267140 - 38267038
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| ||||||  ||||||||| ||| ||||||||| ||||||| || |||    
T  38267140 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcattact 38267041  T
Q  124 caa 126  Q
    |||    
T  38267040 caa 38267038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 3694467 - 3694383
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgt 108  Q
    ||||||||| |||||| ||  |||| ||| ||||||||||||||||||||||| ||| || |||||||||| |||||||||||||    
T  3694467 agaaagtgtgcttgtgcgggatccacatgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgtcacctaagggtgt 3694383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 4999514 - 4999606
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    |||||||||  ||||| || |||||  || |||||| |||||||||||||||| |||||| ||||||||||||| |||||||||| |||||||    
T  4999514 agaaagtgtgtttgtgcggggtccacgtgactacgtatcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtat 4999606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 8080383 - 8080475
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||| ||| | ||||||  ||||||||||||||||||||||| |||||||    
T  8080383 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtat 8080475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 18207248 - 18207180
Alignment:
Q  56 acgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactc 124  Q
    |||||| |||||||||| ||| ||||||||||||||||||||||||||| ||| ||||||| |||||||    
T  18207248 acgtgttagatttttgtatgggtgtcaagaggtgtattgccacctaaggttgtctatgtatcataactc 18207180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 36362126 - 36362034
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| ||||||  | |||||| |||||||||||||| |||||||    
T  36362126 agaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtat 36362034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 10343597 - 10343655
Alignment:
Q  58 gtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||||||||| |||||||    
T  10343597 gtgtcagatttttgtgtgggtgtcaagatgtgtatttccacctaagggtgtctatgtat 10343655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 19436217 - 19436279
Alignment:
Q  54 ctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||||||||||||||||| |||||| |||||||||| ||||||||| ||| |||||||    
T  19436217 ctacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtat 19436279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 46374812 - 46374902
Alignment:
Q  34 cttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactc 124  Q
    |||||| || |||||| |||| ||||||||||||||||||||| ||| ||  ||||| ||||||||||||| ||| ||||||| |||||||    
T  46374812 cttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 21234501 - 21234400
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||| ||| |||||| || || ||| ||||||||||||| |||||||||||  ||||||  ||||||||| ||||||||| ||| ||||||| ||||||    
T  21234501 agaaaatgtgcttgtgcggggtacatgtggctacgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataact 21234402  T
Q  124 ca 125  Q
    ||    
T  21234401 ca 21234400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 35137633 - 35137532
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    |||||||||  ||||| || |||||  || |||||||| |||||||||||||| ||||||  ||||||||||||||||||||||| ||| ||| || |||    
T  35137633 agaaagtgtgtttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcattact 35137534  T
Q  124 ca 125  Q
    ||    
T  35137533 ca 35137532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 38837317 - 38837225
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgt-caagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||| |||||||    
T  38837317 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtaggtgtacaag-ggtgtattgccacctaagggtgtctatgtat 38837225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 3434662 - 3434570
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| ||  ||||  || ||||||||||| ||||||||||| ||||||  ||||||||||||||||||| ||| |||||||    
T  3434662 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtat 3434570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 26296734 - 26296644
Alignment:
Q  34 cttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactc 124  Q
    |||||| || ||||||||||| |||| |||||||||| ||||||||| ||  ||| ||||| ||||||||| ||| ||||||| |||||||    
T  26296734 cttgtgcggggtccatatggccacgtatcagatttttatgtggatgttaaagggtatattgtcacctaaggatgtctatgtatcataactc 26296644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 2318279 - 2318348
Alignment:
Q  60 gtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactcaatta 129  Q
    ||||||||||||||||| ||||||||||||| |||||||||| || |||| |||||| || ||| |||||    
T  2318279 gtcagatttttgtgtgggtgtcaagaggtgtcttgccacctatggttgttaatgtatcatcactaaatta 2318348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 40957777 - 40957715
Alignment:
Q  54 ctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||||||||||||||||| | ||||   ||||||||||||||||| |||| |||||||    
T  40957777 ctacgtgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtat 40957715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 32951493 - 32951585
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || |||||||| |||||||||||||||||| ||  | ||||||| || ||||| |||| |||||||    
T  32951493 agaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtggatgttaaaggatgtattgtcatctaagagtgtctatgtat 32951585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 41423747 - 41423679
Alignment:
Q  59 tgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactcaat 127  Q
    ||||||||||||||||   |||||||||||||||| ||| |||| | ||| ||||||| ||||||||||    
T  41423747 tgtcagatttttgtgtaagtgtcaagaggtgtattaccatctaatgatgtctatgtatcataactcaat 41423679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 16374856 - 16374894
Alignment:
Q  56 acgtgtcagatttttgtgtggatgtcaagaggtgtattg 94  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  16374856 acgtgtcagatttttgtgtggatgtcaagggatgtattg 16374894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 46033811 - 46033901
Alignment:
Q  34 cttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactc 124  Q
    |||||| ||||| ||| || | ||||||||||||||| ||||| ||| ||  ||||||||||||||||||  | | ||||||| |||||||    
T  46033811 cttgtgcggagttcatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataactc 46033901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 36208238 - 36208173
Alignment:
Q  59 tgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactc 124  Q
    |||||| ||||||||||| ||||||    |||||| |||||||||||||| ||||||| |||||||    
T  36208238 tgtcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatgtatcataactc 36208173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 41131625 - 41131532
Alignment:
Q  127 ttacttttctacaccgatgaagagttacttttctcgaaactctacacatatttttcctgcagatatcttcattttcttttattaattaattatt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  41131625 ttacttttctacaccgatgaagagttacttttctcgaaactctacacatatttttcctacagatatcttcattttcttttattaattatttatt 41131532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 50590987 - 50591102
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || ||||||||||| || |||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  50590987 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgttt 50591086  T
Q  111 atgtatgataactcaa 126  Q
    |||||| |||||||||    
T  50591087 atgtatcataactcaa 50591102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 5958987 - 5959100
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || ||||||||| | || |||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  5958987 gagaagaagaaagagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgttt 5959086  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  5959087 atgtatcataactc 5959100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 41608480 - 41608595
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||  || ||||||||||| || |||||||||||||||||  ||||||| ||||||||||||||||||| |||||    
T  41608480 gagaagaagaaagagaaagtgtacttgtacggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgttt 41608579  T
Q  111 atgtatgataactcaa 126  Q
    |||||| |||||||||    
T  41608580 atgtatcataactcaa 41608595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 49811527 - 49811627
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| ||| ||| ||| ||||||    
T  49811527 agaaagtgtgcttgtgcggagtctatatggctacgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcataact 49811626  T
Q  124 c 124  Q
    |    
T  49811627 c 49811627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 47748555 - 47748442
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| ||||||| |||||||| ||  |||||||||| || |||||||||||| | ||| ||||||| ||||||||||||||||||||| |||    
T  47748555 gagaagaagaaagagaaagtatacttgtgcgggatccatatggccacatgtcagatttttatatgggtgtcaag-ggtgtattgccacctaagggtattt 47748457  T
Q  111 atgtatgataactca 125  Q
    |||||| ||||||||    
T  47748456 atgtatcataactca 47748442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 2582019 - 2581923
Alignment:
Q  20 aaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||||||| |||||| || |||||  || ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||| |||||||    
T  2582019 aaaaagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 2581923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 48716284 - 48716384
Alignment:
Q  26 aaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactca 125  Q
    ||||||| |||||| || |||||  || ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||| || |||||    
T  48716284 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactca 48716383  T
Q  126 a 126  Q
    |    
T  48716384 a 48716384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 38632323 - 38632413
Alignment:
Q  26 aaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||| |||||| || |||||  || ||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||    
T  38632323 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtat 38632413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 3000419 - 3000327
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||  || |||||  || ||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||    
T  3000419 agaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtat 3000327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 9474876 - 9474978
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    |||||||||  ||||| || |||||  || ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||| ||||||| || |||    
T  9474876 agaaagtgtgtttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattact 9474975  T
Q  124 caa 126  Q
    |||    
T  9474976 caa 9474978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 27564735 - 27564836
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| || |||||  ||  |||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||||| || |||    
T  27564735 agaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattact 27564834  T
Q  124 ca 125  Q
    ||    
T  27564835 ca 27564836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 32813347 - 32813247
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| || |||||| || | ||||||||||||||||||||| ||| ||  ||||||||||||||||||| ||| ||||||| ||||||    
T  32813347 agaaagtgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataact 32813248  T
Q  124 c 124  Q
    |    
T  32813247 c 32813247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 38595254 - 38595162
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||  || |||||  || ||||||||||||||||||||||| ||||||  ||||||||||||||||| |||||||||||||    
T  38595254 agaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtat 38595162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 11152373 - 11152458
Alignment:
Q  19 gaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagg 104  Q
    ||||||||||| || |||||| || ||| | ||| |||||||||||||||||||||||||||| |  |||||||||||||||||||    
T  11152373 gaaaaagaaagcgtgcttgtgcggggtctacatgactacgtgtcagatttttgtgtggatgtcgaagggtgtattgccacctaagg 11152458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 47452320 - 47452421
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| ||  ||||  || |||||||| |||||||||||||| ||||||  |||||||| |||||||||||||| ||||||| || |||    
T  47452320 agaaagtgtgcttgtgcgggatccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattact 47452419  T
Q  124 ca 125  Q
    ||    
T  47452420 ca 47452421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 51898678 - 51898775
Alignment:
Q  19 gaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    |||| ||||||||| |||||| ||  ||||  || ||||||||||||||||||||||| ||||||  ||||||||||||||||| | ||| |||||||    
T  51898678 gaaatagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtat 51898775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 8346388 - 8346480
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| ||||||  | |||||  || ||||||||||||||||||||||| ||||||  ||||||||||||||||| ||||  |||||||    
T  8346388 agaaagtgtgcttgtgcagggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactatgtat 8346480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 41758905 - 41758813
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    |||||||||  ||||| || |||||| || ||||||||||||||||||||||| ||||||  ||||||||||||  ||| ||||| |||||||    
T  41758905 agaaagtgtgtttgtgcggggtccatgtgactacgtgtcagatttttgtgtggttgtcaaagggtgtattgccatttaatggtgtctatgtat 41758813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 44548376 - 44548468
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| | ||||  ||||||||||||||||| | ||| |||||||    
T  44548376 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtatcaaatggtgtattgccacctaaagatgtctatgtat 44548468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 44332358 - 44332433
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagag 86  Q
    |||||||||||| ||||||| |||||||| || ||||||| ||| || |||||||||||| ||||| |||||||||    
T  44332358 gagaagaagaaagagaaagtatacttgtgcggggtccatagggccacatgtcagatttttatgtgggtgtcaagag 44332433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 3302528 - 3302634
Alignment:
Q  19 gaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatga 118  Q
    |||||||||||||| |||||  || |||||||||  |||||||||||||||||||||| |||| ||   | ||||| ||||||||| ||| ||||||| |    
T  3302528 gaaaaagaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatatattgtcacctaaggatgtatatgtatca 3302627  T
Q  119 taactca 125  Q
    | |||||    
T  3302628 ttactca 3302634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 37926425 - 37926538
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||  ||| |||||||||||||||  ||  ||||| |||| ||||||||||||||| ||||| ||| || || ||||||||||||||| | | | |    
T  37926425 gagaagagaaaagagaaagtgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatct 37926524  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  37926525 atgtatcataactc 37926538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 45044571 - 45044640
Alignment:
Q  35 ttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagg 104  Q
    ||||| || |||||| ||||||| |||||||||||||| ||| ||||||  |||||||||||||||||||    
T  45044571 ttgtgcggggtccatgtggctacatgtcagatttttgtatgggtgtcaaatggtgtattgccacctaagg 45044640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 43232 - 43140
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| ||||||||  || ||||||||||||||||||||||| ||||||  | ||||||| | ||||||  ||| |||||||    
T  43232 agaaagtgtgcttgtgcggagtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctatgtat 43140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 44454044 - 44453980
Alignment:
Q  59 tgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    |||||||||||||||||| | ||||||| ||||||||||| ||| ||||| ||||||| ||||||    
T  44454044 tgtcagatttttgtgtgggtatcaagagatgtattgccacttaaaggtgtctatgtatcataact 44453980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 50630558 - 50630466
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| |  |||  | ||||||||||||||||||| | |||||||    
T  50630558 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtaacaaaggatgtattgccacctaagggtatctatgtat 50630466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 26274498 - 26274440
Alignment:
Q  58 gtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||||||| ||||||||||||  | ||||||||||| ||||||||| |||||||    
T  26274498 gtgtcagatttttctgtggatgtcaaatgatgtattgccacataagggtgtctatgtat 26274440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 37649266 - 37649197
Alignment:
Q  56 acgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactca 125  Q
    ||||||||||||||||||||| ||||||   |||||||||||||||| | ||| ||||||| || |||||    
T  37649266 acgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactca 37649197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 26440834 - 26440733
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| ||| || ||  ||||| |||| ||||||||||||||||||||| ||| ||  ||||||||| || |||||| ||| ||| |||  |||||    
T  26440834 agaaagtgtgcttatgcgggatccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtattgtcatctaaggatgtctatctatcctaact 26440735  T
Q  124 ca 125  Q
    ||    
T  26440734 ca 26440733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 34340071 - 34340130
Alignment:
Q  56 acgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    |||||||||||||||||||||   |||| ||||||||| ||||||||| |||| |||||||    
T  34340071 acgtgtcagatttttgtgtgg-catcaacaggtgtattaccacctaagagtgtctatgtat 34340130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 15508011 - 15508126
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || ||||||||||| || |||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  15508011 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgttt 15508110  T
Q  111 atgtatgataactcaa 126  Q
    |||||| |||||||||    
T  15508111 atgtatcataactcaa 15508126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 15990029 - 15990142
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || ||||||||||| || |||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  15990029 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgttt 15990128  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  15990129 atgtatcataactc 15990142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 30341347 - 30341460
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || ||||||||||| || |||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  30341347 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgttt 30341446  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  30341447 atgtatcataactc 30341460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 4231661 - 4231546
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || ||||||||||| ||||||||||||||||||||| || |||| ||||||||||||||||| | |||||    
T  4231661 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacgtgtcagatttttgtgtgggtggcaaggggtgtattgccacctaatgatgttt 4231562  T
Q  111 atgtatgataactcaa 126  Q
    ||| || |||||||||    
T  4231561 atgaatcataactcaa 4231546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 32869778 - 32869686
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||| |||||||    
T  32869778 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 32869686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 17598654 - 17598553
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| || |||||  || | ||||||||||||||||||||| |||||| || ||||||||||||||||||||| ||||||| || |||    
T  17598654 agaaagtgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcattact 17598555  T
Q  124 ca 125  Q
    ||    
T  17598554 ca 17598553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 22880658 - 22880750
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || |||||||||||| |||||||||| ||||||  ||||||||||||||||||||||| |||||||    
T  22880658 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 22880750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 31109400 - 31109484
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgt 108  Q
    ||||||||||||| || || ||| |  || ||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  31109400 agaaagtgtacttttgcggggtctacgtgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgt 31109484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 28536475 - 28536578
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||  ||| ||||||||| |||||| || ||||| ||| |  |||||||||||||||||||| ||||||| | ||||||||||||||||| |||||    
T  28536475 gagaagataaaagagaaagtgtgcttgtgtggggtccacatgac--cgtgtcagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgttt 28536572  T
Q  111 atgtat 116  Q
    ||||||    
T  28536573 atgtat 28536578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 31110761 - 31110859
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| ||||||  | |||||| ||| ||||||||||||||||||| |  ||||||  ||||||||||||||||||| ||| ||||||| ||||||    
T  31110761 agaaagtgtgcttgtgcagggtccatgtggttacgtgtcagatttttgtgag--tgtcaaagggtgtattgccacctaaggatgtctatgtatcataact 31110858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 31976348 - 31976243
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| || || ||| || | ||||||||||||||||||||| ||| ||  ||| ||||||||||||||| ||| ||||||| ||||||    
T  31976348 agaaagtgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataact 31976249  T
Q  124 caatta 129  Q
    | ||||    
T  31976248 ctatta 31976243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 29857897 - 29857835
Alignment:
Q  54 ctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||||||||||||||||| ||| || ||||||||||||| |||| ||||| |||||||    
T  29857897 ctacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtat 29857835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 6209465 - 6209557
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| || ||| || |||||  || ||||||| ||||||||||||||  ||||||   |||||||||||||||||||||| |||||||    
T  6209465 agaaagtgtgctagtgcggggtccacgtgactacgtgacagatttttgtgtgagtgtcaaatagtgtattgccacctaagggtgtctatgtat 6209557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 11427718 - 11427639
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaag 103  Q
    ||||||||| |||||| ||  ||||  || ||||||||||||||||||||||| ||||||  | ||||||||||||||||    
T  11427718 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaag 11427639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 31953065 - 31953131
Alignment:
Q  59 tgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactca 125  Q
    |||||||||||| ||||| ||||||| ||||||||||||||||||| ||| ||| ||| || |||||    
T  31953065 tgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatctatcattactca 31953131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 16383490 - 16383377
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || ||||||||||| || |||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  16383490 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgttt 16383391  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  16383390 atgtatcataactc 16383377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 24307780 - 24307893
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || ||||||||||| || | |||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  24307780 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatatcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgttt 24307879  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  24307880 atgtatcataactc 24307893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 34307329 - 34307216
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || || |||||| | || |||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  34307329 gagaagaagaaagagaaagtgtacttgtgcggggttcatatgtccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgttt 34307230  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  34307229 atgtatcataactc 34307216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 30479461 - 30479574
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| |  |||||||| || || |||||||||||| ||||||||||||  |||||||||||||||||||||||||    
T  30479461 gagaagaagaaagagaaagtgtacttgtgcgaggtccatatagccacatgtcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgttt 30479560  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  30479561 atgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 16056388 - 16056501
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || ||||||||||| || |||||||||||||||||| ||||||| | ||||||| ||| ||||| |||||    
T  16056388 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataaggatgttt 16056487  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  16056488 atgtatcataactc 16056501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 32032837 - 32032725
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||| ||||| ||||||||||||||||  |  |||||||||| || |||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  32032837 gagaaggagaaagagaaagtgtacttgtgcaggatccatatggccacatgtcagatttttgtgtggatgtcaag-gatgtattgccacctaagggtgttt 32032739  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  32032738 atgtatcataactc 32032725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 15048182 - 15048286
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| || |||||| |||||||||||||||||||||||||| ||||||  ||||||||||||||||||| ||| ||||||| ||||||    
T  15048182 agaaagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgg-tgtcaaagggtgtattgccacctaaggatgtctatgtatcataact 15048280  T
Q  124 caatta 129  Q
    ||||||    
T  15048281 caatta 15048286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 40423943 - 40424045
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| || ||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||| | ||||||| || |||    
T  40423943 agaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcattact 40424042  T
Q  124 caa 126  Q
    |||    
T  40424043 caa 40424045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 504121 - 504222
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    |||| |||| |||||| || |||||  || ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| || |||    
T  504121 agaatgtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattact 504220  T
Q  124 ca 125  Q
    ||    
T  504221 ca 504222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 1179940 - 1180032
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| ||| |||| ||| ||||||||||||||||||||||| ||||||  |||||||| |||||||||||||| |||||||    
T  1179940 agaaagtgtgcttgtgcggaatccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtat 1180032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 14548022 - 14547930
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||| |||||||    
T  14548022 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtat 14547930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 15197433 - 15197332
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| ||||||  |||||||||||||||||| |||| ||||||| || |||    
T  15197433 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattact 15197334  T
Q  124 ca 125  Q
    ||    
T  15197333 ca 15197332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 23122597 - 23122698
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| ||| || || |||||  || ||||||||||||||||||||||| |||||| |||||||||||||| ||||||||| ||||||| || |||    
T  23122597 agaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcattact 23122696  T
Q  124 ca 125  Q
    ||    
T  23122697 ca 23122698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 12831147 - 12831055
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| ||||||  ||||||||| ||||||||||||| |||||||    
T  12831147 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtat 12831055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 24307709 - 24307629
Alignment:
Q  44 gtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactc 124  Q
    ||||||||||| || | |||||||||||||||| ||||||  | ||||||||||||||||||||||||||||| |||||||    
T  24307709 gtccatatggccacatatcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactc 24307629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 10621087 - 10621185
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataac 122  Q
    ||||||||| |||||| ||  || || |||||||||||||||||||||||||| ||||||  |||||||| |||||||||| ||| ||||||| |||||    
T  10621087 agaaagtgtgcttgtgcgggatcgatgtggctacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataac 10621185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 17443938 - 17443825
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    ||||||| |||| |||||||||  ||||| || ||||| ||| |||| |||||||||||||||||  ||| |||| |||||||| ||||||||| ||| |    
T  17443938 gagaagatgaaagagaaagtgtctttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtct 17443839  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  17443838 atgtatcataactc 17443825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 37038584 - 37038469
Alignment:
Q  19 gaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatga 118  Q
    |||| ||||||||| |||||| ||  ||||  || ||||||||||||||||||||||| ||||||  ||||||||||||||||| | ||| ||||||| |    
T  37038584 gaaatagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatca 37038485  T
Q  119 taactcaattactttt 134  Q
    | |||| |||| ||||    
T  37038484 ttactctattattttt 37038469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 10284626 - 10284731
Alignment:
Q  19 gaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatga 118  Q
    |||| ||||||||| |||||| || |||||  || |||||||||| |||||||||||| ||||||   |||||||| ||| ||||||||| ||||||| |    
T  10284626 gaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatca 10284725  T
Q  119 taactc 124  Q
    ||||||    
T  10284726 taactc 10284731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 34012296 - 34012397
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| ||  ||||  || |||||||||| |||||||||||| ||||||  |||||||| |||||||||||||| ||||||| || |||    
T  34012296 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattact 34012395  T
Q  124 ca 125  Q
    ||    
T  34012396 ca 34012397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 5957900 - 5957838
Alignment:
Q  54 ctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||||||||||||||||| ||||||  ||||||||||||||||||  ||| |||||||    
T  5957900 ctacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtat 5957838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 8841427 - 8841513
Alignment:
Q  19 gaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaaggg 105  Q
    |||| ||||||||| |||||| || |||||  || |||||||| |||||||||||||| ||||||  |||||| |||||||||||||    
T  8841427 gaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaaggg 8841513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 14055622 - 14055692
Alignment:
Q  54 ctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactc 124  Q
    |||| ||| ||||||||||||||||||||||  |||||||| |||||||||||||  |||||| |||||||    
T  14055622 ctacatgtaagatttttgtgtggatgtcaaggagtgtattgtcacctaagggtgtcaatgtatcataactc 14055692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 42221620 - 42221523
Alignment:
Q  19 gaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    |||| ||||||||| |||||  || |||||||||  |||||||||||||||||||||| |||| ||   ||||||| ||||||||| ||| |||||||    
T  42221620 gaaagagaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatgtattgtcacctaaggatgtatatgtat 42221523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 43414581 - 43414682
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| ||  ||||| || | |||||| |||||||||||||| ||||||  ||||| |||||| |||||| ||| ||||||| ||||||    
T  43414581 agaaagtgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcataact 43414680  T
Q  124 ca 125  Q
    ||    
T  43414681 ca 43414682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 38229493 - 38229428
Alignment:
Q  59 tgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactca 125  Q
    |||||||||||||||||| ||||| |||  ||||||||||||||| ||||| |||||| ||||||||    
T  38229493 tgtcagatttttgtgtgggtgtcaggagc-gtattgccacctaagagtgttcatgtatcataactca 38229428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 44507117 - 44507179
Alignment:
Q  54 ctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||||||||||||||||| ||| ||   ||||||| |||||||||||||| |||||||    
T  44507117 ctacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaagggtgtctatgtat 44507179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 15258964 - 15259029
Alignment:
Q  59 tgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactc 124  Q
    |||||||||||| |||||||||| || | |||||||||| ||||| || | ||||||| |||||||    
T  15258964 tgtcagatttttatgtggatgtccagggatgtattgccatctaagagtatctatgtatcataactc 15259029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 20074966 - 20075035
Alignment:
Q  56 acgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactca 125  Q
    |||||||| |||||| ||||| ||||||   |||||||||||||||||| ||| ||||||| || |||||    
T  20074966 acgtgtcacatttttatgtgggtgtcaaagagtgtattgccacctaaggatgtctatgtatcattactca 20075035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 4854863 - 4854955
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| ||||||  | |||||| |||| || | |||||||||| ||| | ||| ||  ||||||||||||||||||| ||| |||||||    
T  4854863 agaaagtgtgcttgtgcagggtccatgtggccacatatcagatttttatgtaggtgttaaagggtgtattgccacctaaggatgtctatgtat 4854955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 3921252 - 3921365
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || ||||||||||| || |||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  3921252 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgttt 3921351  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  3921352 atgtatcataactc 3921365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 2252155 - 2252268
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || ||||||||||| || |||||||||||||||||| ||||||| ||||||||||||||||||| |||||    
T  2252155 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgttt 2252254  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  2252255 atgtatcataactc 2252268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 35785269 - 35785195
Alignment:
Q  54 ctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactcaatt 128  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| || ||||||||    
T  35785269 ctacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactcaatt 35785195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 39688887 - 39688997
Alignment:
Q  14 aagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatg 113  Q
    ||||||||| ||||||||||||| || || || |||||| | || | |||||||||||||||| ||||||| | ||||||||||| ||||||||||||||    
T  39688887 aagaagaaagagaaagtgtacttatgcggggttcatatgaccacatatcagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatg 39688986  T
Q  114 tatgataactc 124  Q
    ||| |||||||    
T  39688987 tatcataactc 39688997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 40145507 - 40145406
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| ||||||| || |||    
T  40145507 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcattact 40145408  T
Q  124 ca 125  Q
    ||    
T  40145407 ca 40145406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 18520884 - 18520976
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||| |||||||    
T  18520884 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 18520976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 28177875 - 28177774
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    |||||||||  ||||| || |||||| || | ||||||||||||||||||||| ||||||  ||||||||||||||||||| ||| ||||||| ||||||    
T  28177875 agaaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataact 28177776  T
Q  124 ca 125  Q
    ||    
T  28177775 ca 28177774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 13811752 - 13811660
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| ||||||  | ||||||||||||||||||||| |||||||    
T  13811752 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtat 13811660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 42414304 - 42414403
Alignment:
Q  26 aaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactca 125  Q
    ||||||| |||||| || ||||| ||| ||||||||||||||||||||||| ||||||  ||||||||||||||||  ||||| ||||||| || |||||    
T  42414304 aaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctactggtgtctatgtatcattactca 42414403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 14831923 - 14831813
Alignment:
Q  15 agaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgt 114  Q
    |||| ||||||||||||| |||||| ||  ||||  || ||||||||||||||||| ||||| ||||||  |||||||||||||||||| |||| |||||    
T  14831923 agaaaaaaaagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgt 14831824  T
Q  115 atgataactca 125  Q
    || || |||||    
T  14831823 atcattactca 14831813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 35943922 - 35943992
Alignment:
Q  54 ctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactc 124  Q
    ||||||||||||||||||||||| ||||||  | ||||||||||||||||||||| ||||||| |||||||    
T  35943922 ctacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 6679787 - 6679698
Alignment:
Q  35 ttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactc 124  Q
    ||||| || |||||| || | ||||||||||||||||||||| |||||| |||||||||||||||||| | ||| ||||||| |||||||    
T  6679787 ttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataactc 6679698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 2740374 - 2740282
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| ||  ||||  || ||||||||||||||||||||||| ||||||  ||||||||||||||||||| ||| |||||||    
T  2740374 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtat 2740282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 15409614 - 15409710
Alignment:
Q  28 agtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactc 124  Q
    ||||| |||||| || |||||| |||||||||||||||||||||||||| ||||||    ||||||| ||||||||| ||| ||||||| |||||||    
T  15409614 agtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataactc 15409710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 36732942 - 36733034
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||| ||||||||||||||||||| ||||||  |||||||||| |||||||||||| |||||||    
T  36732942 agaaagtgtgcttgtgcggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtat 36733034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 26720629 - 26720515
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||  ||| ||||||||| |||||| ||  ||||| |||| ||||||||||||||| ||| | ||| ||  ||||||||||||||||||| ||| |    
T  26720629 gagaagagaaaagagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtct 26720530  T
Q  111 atgtatgataactca 125  Q
    |||||| ||||||||    
T  26720529 atgtatcataactca 26720515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 26990378 - 26990264
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||  ||| ||||||||| |||||| ||  ||||| |||| ||||||||||||||| ||| | ||| ||  ||||||||||||||||||| ||| |    
T  26990378 gagaagagaaaagagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtct 26990279  T
Q  111 atgtatgataactca 125  Q
    |||||| ||||||||    
T  26990278 atgtatcataactca 26990264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 33149638 - 33149739
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| ||  ||||  || |||||||||| |||||||||||| ||||||  |||||||| |||||||||||||| ||||||| || |||    
T  33149638 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattact 33149737  T
Q  124 ca 125  Q
    ||    
T  33149738 ca 33149739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 31009101 - 31008988
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgt-caagaggtgtattgccacctaagggtgtt 109  Q
    ||||||| |||| ||||||||| |||||| ||  ||||  || ||||||||||||||||||||||| |||  ||||  ||||||| ||||||||| ||||    
T  31009101 gagaagaggaaatagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtggaaga-atgtattgtcacctaaggatgtt 31009003  T
Q  110 tatgtatgataactc 124  Q
    ||||||| |||||||    
T  31009002 tatgtatcataactc 31008988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 39557549 - 39557594
Alignment:
Q  56 acgtgtcagatttttgtgtggatgtcaagaggtgtattgccaccta 101  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||    
T  39557549 acgtgtcagatttttgtgtggatgttaagaggtgtattaccaccta 39557594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 36875644 - 36875695
Alignment:
Q  65 atttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    |||||||||||| ||||||  ||||||||||||||||||||||| |||||||    
T  36875644 atttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 36875695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 33825356 - 33825403
Alignment:
Q  56 acgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaag 103  Q
    ||||||||||||||| ||||| |||||||  |||||||||||||||||    
T  33825356 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaag 33825403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 124
Target Start/End: Complemental strand, 38296274 - 38296203
Alignment:
Q  53 gctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactc 124  Q
    |||||||||| ||||||||||||| | | ||||||||||||| ||||||||   || ||||||| |||||||    
T  38296274 gctacgtgtctgatttttgtgtgggtattaagaggtgtattgacacctaagatagtctatgtatcataactc 38296203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 10356698 - 10356642
Alignment:
Q  61 tcagatttttgtgtggatgtcaagagg-tgtattgccacctaagggtgtttatgtat 116  Q
    |||||||||||||||| ||||||  || ||||||||||||||||| ||| |||||||    
T  10356698 tcagatttttgtgtgggtgtcaatgggatgtattgccacctaaggatgtctatgtat 10356642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 16327969 - 16327921
Alignment:
Q  56 acgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagg 104  Q
    ||||||||||||||| ||||| ||||||  | |||||||||||||||||    
T  16327969 acgtgtcagatttttatgtgggtgtcaatggatgtattgccacctaagg 16327921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 55079700 - 55079814
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtg-gggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtt 109  Q
    |||||||||||| |||||||||||||||| ||| ||||||||||| || |||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  55079700 gagaagaagaaagagaaagtgtacttgtgtgggggtccatatggccacatgtcagatttttgtatgggtgtcaagaggtgtattgccacctaagggtgtt 55079799  T
Q  110 tatgtatgataactc 124  Q
    ||||||| |||||||    
T  55079800 tatgtatcataactc 55079814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 19670703 - 19670816
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || ||||||||||| || |||||||||||||||||  ||||||| |||||||||||||||||||||||||    
T  19670703 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgttt 19670802  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  19670803 atgtatcataactc 19670816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 47986321 - 47986208
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    ||||| |||||| |||||||||||||||| || ||||||||||| || |||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  47986321 gagaataagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgttt 47986222  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  47986221 atgtatcataactc 47986208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 18924482 - 18924596
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| ||||| ||||| || || |||||||||||||||||||| ||||| ||||||||||||||||||||| |||    
T  18924482 gagaagaagaaagagaaagtgtacttgtgcggagttcatattgccacatgtcagatttttgtgtggatatcaaggggtgtattgccacctaagggtattt 18924581  T
Q  111 atgtatgataactca 125  Q
    ||| || ||||||||    
T  18924582 atggatcataactca 18924596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 32767071 - 32766958
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| ||||||||||||||||  | ||||||||||| || |||||||||||||| ||| ||||||| |||||||||||||||||| ||||||    
T  32767071 gagaagaagaaagagaaagtgtacttgtgcagggtccatatggccacatgtcagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgttt 32766972  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  32766971 atgtatcataactc 32766958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 17983730 - 17983825
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggt 106  Q
    |||||||||||| |||||||||||||||| || ||||||||||| || |||||||||||||||||| ||||||| |||||||||||||||||||||    
T  17983730 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggt 17983825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 50813879 - 50813997
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || || |||||| | || |||||||||||||||||| ||||||| |||||||| ||||||||| ||||||    
T  50813879 gagaagaagaaagagaaagtgtacttgtgcggggttcatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgttt 50813978  T
Q  111 atgtatgataactcaatta 129  Q
    |||||| ||||||| ||||    
T  50813979 atgtatcataactctatta 50813997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 55475304 - 55475191
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| ||||||||||||| ||  | ||||||||||| || |||||||||||||||||| ||||||  ||||||||||||||||||| |||||    
T  55475304 gagaagaagaaagagaaagtgtacttatgcagggtccatatggccacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgttt 55475205  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  55475204 atgtatcataactc 55475191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 29547946 - 29548059
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| | ||||||||||| || ||  |||||||||| || |||||||||||||||||| ||||||| | ||||||||||||||||| |||||    
T  29547946 gagaagaagaaagaaaaagtgtacttatgcgggatccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgttt 29548045  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  29548046 atgtatcataactc 29548059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 29589727 - 29589831
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || ||||||||||| || | |||||||||||||||| ||||||| ||||||||| || ||||||||||||    
T  29589727 gagaagaagaaagagaaagtgtacttgtgtggggtccatatggccacatatcagatttttgtgtgggtgtcaaggggtgtattg-caactaagggtgttt 29589825  T
Q  111 atgtat 116  Q
    ||||||    
T  29589826 atgtat 29589831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 44536733 - 44536845
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| ||||||||||||| || || ||| ||||| | || |||||||||||||||||||||||||| |||||||||||||||||  ||||||    
T  44536733 gagaagaagaaagagaaagtgtacttatgtggggtctatatgaccacatgtcagatttttgtgtggatgtcaag-ggtgtattgccacctaaaagtgttt 44536831  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  44536832 atgtatcataactc 44536845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 41236447 - 41236355
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  41236447 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtat 41236355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 29977998 - 29977908
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccaccta 101  Q
    ||||||| |||| ||||||||| |||||| || ||||||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||    
T  29977998 gagaagatgaaagagaaagtgtgcttgtgtggggtccatatgactacgtgtcagatttttgtgtgggtgttaaggggtgtattgccaccta 29977908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 8343150 - 8343263
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| ||||||| ||||| || || ||||||||||| || |||||||||||| ||| | ||||||  | ||||||||||||||||| |||||    
T  8343150 gagaagaagaaagagaaagtatacttatgcggggtccatatggccacatgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgttt 8343249  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  8343250 atgtatcataactc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 29239991 - 29239894
Alignment:
Q  19 gaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    |||| ||||||||| |||||| || |||||  || |||||||| |||||||||||||||||||||  ||||||||||||||||||||||| |||||||    
T  29239991 gaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtat 29239894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 11511449 - 11511564
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||  ||| ||||||||| |||||| || |||||  || ||||||||||||||||| ||||| ||||||  ||||||||||||||||||||||| |    
T  11511449 gagaagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtct 11511548  T
Q  111 atgtatgataactcaa 126  Q
    |||||| || ||||||    
T  11511549 atgtatcattactcaa 11511564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 31910292 - 31910189
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| || |||||| |||||| ||||||||||||||||||| ||||||   |||||||| ||||||||| ||| ||||||| ||||||    
T  31910292 agaaagtgtgcttgtgcggggtccatgtggctatgtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataact 31910193  T
Q  124 caat 127  Q
    ||||    
T  31910192 caat 31910189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 50052423 - 50052520
Alignment:
Q  19 gaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    |||| ||||||||| |||||| || |||||  || ||||||||||||||||||||||| ||||||  ||||||||||||||||||| ||| |||||||    
T  50052423 gaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtat 50052520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 48183049 - 48183141
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| ||||||  ||||||||||||| ||||||||| |||||||    
T  48183049 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtat 48183141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 6034144 - 6034042
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| ||  ||||  || |||| |||||||||||||||||| ||||||  ||||||||||||||||||||||| ||||||| || |||    
T  6034144 agaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattact 6034045  T
Q  124 caa 126  Q
    |||    
T  6034044 caa 6034042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 480447 - 480539
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||  || |||||  || ||||||||||||||||||||||| ||||||  ||||||||| ||||||||||||| |||||||    
T  480447 agaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtat 480539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 54473535 - 54473635
Alignment:
Q  26 aaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactca 125  Q
    ||||||| |||||| || |||||  || |||||||| |||||||||||||| ||||||  ||||||||| ||||||||||||| ||||||| || |||||    
T  54473535 aaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcattactca 54473634  T
Q  126 a 126  Q
    |    
T  54473635 a 54473635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 3481759 - 3481653
Alignment:
Q  19 gaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatga 118  Q
    |||| ||||||||| |||||| || |||||  || ||| ||||||||||||||||||| ||||||   |||||||||||||||| ||||| ||||||| |    
T  3481759 gaaagagaaagtgtgcttgtgtggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatca 3481660  T
Q  119 taactca 125  Q
    | |||||    
T  3481659 ttactca 3481653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 42044367 - 42044459
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgt-caagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| ||| |||| | ||||||||||||||||||||| |||||||    
T  42044367 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtacaag-gatgtattgccacctaagggtgtctatgtat 42044459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 23608335 - 23608251
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgt 108  Q
    ||||||||| |||||| ||||| ||  || ||||||||||||||||||||||| ||||||  ||||||||| || ||||||||||    
T  23608335 agaaagtgtgcttgtgtggagttcacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgtcatctaagggtgt 23608251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 28480268 - 28480368
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    |||||||||  ||||| || ||||| ||| |||| |||||||||||||||||  ||| |||| |||||||| ||||||||| ||| ||||||| ||||||    
T  28480268 agaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtattataact 28480367  T
Q  124 c 124  Q
    |    
T  28480368 c 28480368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 28481143 - 28481243
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    |||||||||  ||||| || ||||| ||| |||| |||||||||||||||||  ||| |||| |||||||| ||||||||| ||| ||||||| ||||||    
T  28481143 agaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtattataact 28481242  T
Q  124 c 124  Q
    |    
T  28481243 c 28481243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 28482018 - 28482118
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    |||||||||  ||||| || ||||| ||| |||| |||||||||||||||||  ||| |||| |||||||| ||||||||| ||| ||||||| ||||||    
T  28482018 agaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtattataact 28482117  T
Q  124 c 124  Q
    |    
T  28482118 c 28482118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 40574846 - 40574778
Alignment:
Q  57 cgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactca 125  Q
    |||||||||||||||||||| ||||||  |||||||| |||||||||| ||| ||||||| ||||||||    
T  40574846 cgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactca 40574778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 50526166 - 50526273
Alignment:
Q  19 gaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatga 118  Q
    |||| |||||| || |||||| ||| ||||  || | ||||||||||||||||||||| ||||||  ||||||||||||||||| | ||| ||||||| |    
T  50526166 gaaatagaaagcgtgcttgtgcggaatccacgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatca 50526265  T
Q  119 taactcaa 126  Q
    | ||||||    
T  50526266 ttactcaa 50526273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 48647721 - 48647826
Alignment:
Q  19 gaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatga 118  Q
    |||| ||||| ||| |||||| ||||||||  || | |||||| |||||||| ||||| ||| |||||||||||||  |||||||| ||||||||| | |    
T  48647721 gaaagagaaattgtgcttgtgcggagtccacgtgaccacgtgttagatttttatgtgggtgttaagaggtgtattgttacctaaggatgtttatgtgtca 48647820  T
Q  119 taactc 124  Q
    ||||||    
T  48647821 taactc 48647826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 29234245 - 29234337
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||  | | ||||  |||||||||||| |||||||||| |||||||    
T  29234245 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgaaggtatcaaagggtgtattgccatctaagggtgtctatgtat 29234337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 24995107 - 24995191
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgt 108  Q
    ||||| ||| |||||| || |||||  || |||||||||| |||||| ||||| ||||||  |||||||||||| ||||||||||    
T  24995107 agaaaatgtgcttgtgcggggtccacgtgactacgtgtcaaatttttatgtgggtgtcaaagggtgtattgccatctaagggtgt 24995191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 41823982 - 41823930
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtgg 76  Q
    ||||||||| |||||| || |||||| || |||||||||||||||||||||||    
T  41823982 agaaagtgtgcttgtgcggggtccatgtgactacgtgtcagatttttgtgtgg 41823930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 29535436 - 29535375
Alignment:
Q  65 atttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactcaa 126  Q
    ||||||||||||||  |||||| ||||||| ||||||||  ||| ||||||| |||||||||    
T  29535436 atttttgtgtggataccaagagatgtattgtcacctaagattgtctatgtatcataactcaa 29535375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 43490234 - 43490120
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| | |||||||||||||| || ||||||||||| || |||||||||||||||||| ||||||| ||||||||| |||||||||||||||    
T  43490234 gagaagaagaaagataaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgttt 43490135  T
Q  111 atgtatgataactca 125  Q
    |||||| ||||||||    
T  43490134 atgtatcataactca 43490120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 45097722 - 45097835
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || ||||||||||| || |||||||||||||| ||| ||||||| | ||||||||||||||||| |||||    
T  45097722 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgttt 45097821  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  45097822 atgtatcataactc 45097835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 2997474 - 2997569
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggt 106  Q
    |||||||||||| |||||||||||||||| || ||||||||||| || |||||||||||||||||| ||||||| |||||||||||||||||||||    
T  2997474 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggt 2997569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 38732467 - 38732354
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||||||||| || ||||||||| | || |||||||||||||||||| ||||||| | ||||||| ||| |||||||||||    
T  38732467 gagaagaagaaagagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgttt 38732368  T
Q  111 atgtatgataactc 124  Q
    |||||| |||||||    
T  38732367 atgtatcataactc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 28381655 - 28381756
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| ||||||||| || ||||||||||||||||||||||| |||| | |||||||||||||||||||||||| ||||||| || |||    
T  28381655 agaaagtgtgcttgtgcggagtccatgtgactacgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcattact 28381754  T
Q  124 ca 125  Q
    ||    
T  28381755 ca 28381756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 13365466 - 13365351
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagg--gtgt 108  Q
    |||||||||||| |||||||||||||||| || ||||||||||  || |||||||||||||||||| ||||||| ||| |||||||| ||||||  ||||    
T  13365466 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtatattgccatctaagggtgtgt 13365367  T
Q  109 ttatgtatgataactc 124  Q
    |||||||| |||||||    
T  13365366 ttatgtatcataactc 13365351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 40613902 - 40614003
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| || |||||| |||| ||||||||||||||||||||| ||||||  ||||||||||||||||||| ||| ||||||| ||||||    
T  40613902 agaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataact 40614001  T
Q  124 ca 125  Q
    ||    
T  40614002 ca 40614003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 9058580 - 9058488
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || ||||| ||| ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||| |||||||    
T  9058580 agaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 9058488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 19930820 - 19930912
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    |||||||||  ||||| || ||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||    
T  19930820 agaaagtgtgtttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtat 19930912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 4060755 - 4060680
Alignment:
Q  54 ctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactcaatta 129  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||| || |||||||||    
T  4060755 ctacgtgtcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactcaatta 4060680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 10249382 - 10249474
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| |||||||    
T  10249382 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtat 10249474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 28863555 - 28863463
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||| |||||||    
T  28863555 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 28863463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 32505648 - 32505740
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| |||||||    
T  32505648 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtat 32505740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 40701548 - 40701476
Alignment:
Q  54 ctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactcaa 126  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| || ||||||    
T  40701548 ctacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactcaa 40701476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 33436095 - 33436192
Alignment:
Q  19 gaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    |||| ||||||||| |||||| || |||||  || |||||||| |||||||||||||| ||||||  ||||||||||||||||||||||| |||||||    
T  33436095 gaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 33436192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 7465735 - 7465827
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| ||||||  |||||||||||| |||||||||| |||||||    
T  7465735 agaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtat 7465827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 27864810 - 27864703
Alignment:
Q  18 agaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatg 117  Q
    ||||| ||||||||| ||| || || |||||  ||  |||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||     
T  27864810 agaaagagaaagtgtgcttttgcggggtccacgtgattacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatc 27864711  T
Q  118 ataactca 125  Q
    || |||||    
T  27864710 attactca 27864703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 13438443 - 13438342
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| ||||||  | ||||||| ||||||||||||| ||||||| || |||    
T  13438443 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcattact 13438344  T
Q  124 ca 125  Q
    ||    
T  13438343 ca 13438342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 17473120 - 17473028
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| ||  ||||  || ||||||||||||||||||||||| ||||||  |||||||||||| |||||||||| |||||||    
T  17473120 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtat 17473028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 38273142 - 38273242
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| || ||| || |||||| |||||||||||||||||||||||||| ||| ||  |||||||||||| |||||  ||| ||||||| ||||||    
T  38273142 agaaagtgtgctagtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataact 38273241  T
Q  124 c 124  Q
    |    
T  38273242 c 38273242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 42257293 - 42257193
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| || |||||| |||| ||||||||||||||| ||||| ||||||  | ||||||||||||||| | ||| ||||||| ||||||    
T  42257293 agaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcataact 42257194  T
Q  124 c 124  Q
    |    
T  42257193 c 42257193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 2533221 - 2533124
Alignment:
Q  26 aaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactc 124  Q
    ||||||| |||||| || ||| || |||||||||||||||||||||||||| ||||||  | ||||||||||| ||||| ||| ||||||| |||||||    
T  2533221 aaagtgtgcttgtgcggggtctatgtggctacgtgtcagatttttgtgtgg-tgtcaaaggatgtattgccacttaaggatgtctatgtatcataactc 2533124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 33436316 - 33436206
Alignment:
Q  19 gaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatga 118  Q
    |||| ||||||||| ||||||   |||||| ||||  ||||||||||||||| ||||| |||||| ||||||||||||| |||||| ||| ||||||| |    
T  33436316 gaaagagaaagtgtgcttgtgcaaagtccacatggtcacgtgtcagatttttatgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatca 33436217  T
Q  119 taactcaatta 129  Q
    | |||| ||||    
T  33436216 ttactctatta 33436206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 38882844 - 38882905
Alignment:
Q  54 ctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    |||||||||||||||||||||||||||||| |||  ||||||||||||||||||| |||||||    
T  38882844 ctacgtgtcagatttttgtgtggatgtcaa-agggttattgccacctaagggtgtctatgtat 38882905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 26891539 - 26891604
Alignment:
Q  59 tgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactc 124  Q
    |||||||||||||||||| |||| || ||||||||||||||||||||||  ||||||| |||||||    
T  26891539 tgtcagatttttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcataactc 26891604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 5574488 - 5574580
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| ||  ||||  || ||||||||||||||||| ||||| ||||||  |||||||||||||||||| |||| |||||||    
T  5574488 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtat 5574580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 30915563 - 30915471
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||  || |||||  || ||||||||||||||||| |||||  |||||  ||||||||||||||||||||||| |||||||    
T  30915563 agaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtat 30915471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 17820039 - 17820106
Alignment:
Q  59 tgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactcaa 126  Q
    |||||||||||||||||| ||||||| ||||||||||||||||  | ||| ||||||| |||||||||    
T  17820039 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctatagttgtctatgtatcataactcaa 17820106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 3034970 - 3035033
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgt 74  Q
    |||||||||||| ||||||| |||||||| || ||||||||| | || ||||||||||||||||    
T  3034970 gagaagaagaaagagaaagtatacttgtgcggggtccatatgaccacatgtcagatttttgtgt 3035033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 15428766 - 15428840
Alignment:
Q  50 atggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactc 124  Q
    ||||| || |||||||||||||||||  ||| ||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  15428766 atggccacatgtcagatttttgtgtgagtgttaaggggtgtatggccacataaggatgtttatgtatcataactc 15428840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 20700920 - 20700823
Alignment:
Q  19 gaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    |||| ||||||||| ||| || || |||||  || ||||||||||||||||||||| |  |||||  ||||||||||||| ||||| ||| |||||||    
T  20700920 gaaagagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatgtat 20700823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 3440040 - 3439995
Alignment:
Q  63 agatttttgtgtggatgtcaagaggtgtattgccacctaagggtgt 108  Q
    |||||||||||||| |||| ||  ||||||||||||||||||||||    
T  3440040 agatttttgtgtgggtgtccaggagtgtattgccacctaagggtgt 3439995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 12415438 - 12415394
Alignment:
Q  53 gctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccac 98  Q
    ||||| ||||||| |||||||||||||| |||||||||||||||||    
T  12415438 gctacatgtcagaattttgtgtggatgt-aagaggtgtattgccac 12415394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 12427498 - 12427454
Alignment:
Q  53 gctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccac 98  Q
    ||||| ||||||| |||||||||||||| |||||||||||||||||    
T  12427498 gctacatgtcagaattttgtgtggatgt-aagaggtgtattgccac 12427454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 17823853 - 17823792
Alignment:
Q  55 tacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    |||||||||||||||||||||| |||  ||   ||||||||||||||||| ||| |||||||    
T  17823853 tacgtgtcagatttttgtgtgggtgttcaggaatgtattgccacctaaggatgtatatgtat 17823792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 36168936 - 36168836
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||| | |||||| || |||||| |||| |||||||| ||||||||||||  || ||  | ||||||| || |||||| ||| ||||||| ||||||    
T  36168936 agaaagtatgcttgtgcggggtccatgtggccacgtgtcaaatttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctatgtatcataact 36168837  T
Q  124 c 124  Q
    |    
T  36168836 c 36168836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 45058540 - 45058658
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| ||||||| |||||||| || ||||||||||  || |||||||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  45058540 gagaagaagaaagagaaagtatacttgtgcggggtccatatggtcacatgtcagatttttatgtgggtgtcaag-ggtgtattgccacctaagggtgttt 45058638  T
Q  111 atgtatgataactcaattac 130  Q
    |||||| |||||||||||||    
T  45058639 atgtatcataactcaattac 45058658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 36331316 - 36331407
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaa 102  Q
    |||||||||||| |||||||||||||||| || ||||||||||| || |||||||||||||||||| ||||||| |||| ||||||||||||    
T  36331316 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgcattgccacctaa 36331407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 53982111 - 53982010
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||| ||||||| || |||    
T  53982111 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattact 53982012  T
Q  124 ca 125  Q
    ||    
T  53982011 ca 53982010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 47531965 - 47531865
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| || || |||||||| |||||||||||| |||||||||||| || ||||||||||||| |||||| ||| ||||||| ||||||    
T  47531965 agaaagtgtgcttgtgcggggttcatatggccacgtgtcagattcttgtgtggatgttaaaaggtgtattgccatctaaggatgtctatgtatcataact 47531866  T
Q  124 c 124  Q
    |    
T  47531865 c 47531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 33644300 - 33644198
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| ||||||  |||||||||||||| |||||||| ||||||| || |||    
T  33644300 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcattact 33644201  T
Q  124 caa 126  Q
    |||    
T  33644200 caa 33644198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 54868925 - 54868987
Alignment:
Q  54 ctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||    
T  54868925 ctacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtat 54868987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 8076498 - 8076401
Alignment:
Q  19 gaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    |||| ||||||||| |||||| || |||||  || |||||||| |||||||||||||| ||||||  |||||| ||||||||||||||||||||||||    
T  8076498 gaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtat 8076401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 26141532 - 26141633
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| || |||||| || | ||||||||||||||||||||| ||| ||  ||||||||||||||||||| ||| ||||||| ||||||    
T  26141532 agaaagtgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataact 26141631  T
Q  124 ca 125  Q
    ||    
T  26141632 ca 26141633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 17470505 - 17470413
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || |||||  || ||||||||||||||||||||||| ||| || |||||||||||||||||| ||||| |||||||    
T  17470505 agaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgtat 17470413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 27714891 - 27714983
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || ||||| ||| ||||||||||||||||||||||| ||||||  |||||||| |||||||| ||||| |||||||    
T  27714891 agaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtat 27714983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 31456789 - 31456697
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| || ||||| ||| ||||||||||||||||||||||| ||||||  ||||||||||| |||| |||||| |||||||    
T  31456789 agaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccgcctatgggtgtctatgtat 31456697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 49607514 - 49607422
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||| ||  ||||  || ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||| |||||||    
T  49607514 agaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 49607422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 52629400 - 52629308
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||  || |||||  || ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||| |||||||    
T  52629400 agaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 52629308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 11095383 - 11095445
Alignment:
Q  54 ctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||| |||||||    
T  11095383 ctacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 11095445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 36331416 - 36331478
Alignment:
Q  62 cagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactc 124  Q
    ||||||||||||||||||||||| |||| ||||||| |||||||||||||||||| |||||||    
T  36331416 cagatttttgtgtggatgtcaaggggtgcattgccatctaagggtgtttatgtatcataactc 36331478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 13898042 - 13898143
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    ||||||| |||| ||||||||| |||||| |  ||||| |||   ||||||||||||||| ||||| ||||||| ||||||||||||||||||| |||||    
T  13898042 gagaagatgaaagagaaagtgtgcttgtgtgaggtccacatgaacacgtgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgttt 13898141  T
Q  111 at 112  Q
    ||    
T  13898142 at 13898143  T

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Target: chr3; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 11347942 - 11348022
Alignment:
Q  44 gtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactc 124  Q
    |||||| |||| ||||||||||||||||||||||||||||  | ||||||| ||||||||| ||| ||||||| |||||||    
T  11347942 gtccatgtggccacgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataactc 11348022  T

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Target: chr3; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 41189764 - 41189864
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| || |||||| |||| |||||||| |||||| ||||| ||||||  | ||||||||||||||||| ||| ||||||| ||||||    
T  41189764 agaaagtgtgcttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcataact 41189863  T
Q  124 c 124  Q
    |    
T  41189864 c 41189864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 26754800 - 26754706
Alignment:
Q  19 gaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatg 113  Q
    |||| ||||| ||| |||||| || |||||| || | || ||||||||||||||||||||||| |  ||||||||||||||||||||||| ||||    
T  26754800 gaaagagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtccaagggtgtattgccacctaagggtgtctatg 26754706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 33118881 - 33118951
Alignment:
Q  54 ctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactc 124  Q
    |||||||||| |||||||||||| ||||||  ||||||||| ||||||||||||| ||||||| |||||||    
T  33118881 ctacgtgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataactc 33118951  T

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Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 36707454 - 36707516
Alignment:
Q  54 ctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||||||||||||||||||||||||  ||||||||| ||||||||||| | |||||||    
T  36707454 ctacgtgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtat 36707516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 42823224 - 42823114
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    ||||| |||||| ||||||| ||||| || || ||||||||| | || ||||| |||||| ||||| ||||||| |||||||| |||| ||| |||||||    
T  42823224 gagaataagaaagagaaagtatacttatgcggggtccatatgaccacatgtcaaatttttttgtgggtgtcaaggggtgtattaccacataatggtgttt 42823125  T
Q  111 atgtatgataa 121  Q
    |||||| ||||    
T  42823124 atgtatcataa 42823114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 14623826 - 14623931
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    ||||||| |||| ||||||||| |||||| |  ||||| |||   || |||||||||||| ||||| ||||||| ||||||||||||||||||| ||| |    
T  14623826 gagaagatgaaagagaaagtgtgcttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtct 14623925  T
Q  111 atgtat 116  Q
    ||||||    
T  14623926 atgtat 14623931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 48587091 - 48587183
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    |||||||||||||||| ||  ||||  || ||||||||||||||||| ||| | ||||||  ||||||||||||||||||||| | |||||||    
T  48587091 agaaagtgtacttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatgtat 48587183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 20764915 - 20765017
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||  || |||||| |||| ||||||||||||||||||||| ||| ||   ||||||| |||||||||| ||| ||||| | ||||||    
T  20764915 agaaagtgtgcttgtacggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaaggatgtctatgtctcataact 20765014  T
Q  124 caa 126  Q
    |||    
T  20765015 caa 20765017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 30801728 - 30801825
Alignment:
Q  19 gaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    |||| ||||| ||| |||||| || ||||||||| |||| ||||| |||||||||||| | ||||  ||||||||  ||||||||||||| |||||||    
T  30801728 gaaagagaaaatgtgcttgtgtggggtccatatgactacatgtcatatttttgtgtgggtatcaaagggtgtattatcacctaagggtgtctatgtat 30801825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 11907471 - 11907371
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||| ||| |||||| || ||||||||| | || |||||||||||||||||  |||  ||  |||||||| ||||||||||||| ||||||| ||||||    
T  11907471 agaaaatgtgcttgtgcggggtccatatgaccacatgtcagatttttgtgtgagtgttcaggtgtgtattgtcacctaagggtgtctatgtatcataact 11907372  T
Q  124 c 124  Q
    |    
T  11907371 c 11907371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 51419360 - 51419460
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataact 123  Q
    ||||||||| |||||| || ||| || |||| ||||||||||||||||||||| ||| ||  | ||||||| || |||||| ||| ||||||| ||||||    
T  51419360 agaaagtgtgcttgtgcggggtctatgtggccacgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcataact 51419459  T
Q  124 c 124  Q
    |    
T  51419460 c 51419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 24699981 - 24700046
Alignment:
Q  51 tggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    |||| ||||| ||||||||| ||||| |||||| ||||||||||||| |||||| ||| |||||||    
T  24699981 tggccacgtgccagatttttatgtgggtgtcaaaaggtgtattgccaactaaggatgtctatgtat 24700046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 9563069 - 9563007
Alignment:
Q  54 ctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||||||||||| | ||||||||||  | ||||||| || |||| |||||||||||||    
T  9563069 ctacgtgtcagatttttatatggatgtcaaaggttgtattgtcatctaatggtgtttatgtat 9563007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 25395320 - 25395425
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    ||||||| |||| ||||| |||  ||||| || ||| |||| || || |||||||||||||||||| | | ||| | ||||| ||||| ||||| |||||    
T  25395320 gagaagatgaaagagaaaatgtgtttgtgtggggtctatatagccacatgtcagatttttgtgtgggtattaagggatgtatggccacataaggatgttt 25395419  T
Q  111 atgtat 116  Q
    ||||||    
T  25395420 atgtat 25395425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 35536739 - 35536634
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    ||||||| |||| || |||||| ||||||    ||||| ||| | |||||||| |||||| ||||| ||||||  ||||||||||||| ||||| ||| |    
T  35536739 gagaagatgaaagaggaagtgtgcttgtgtaaggtccacatgaccacgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataaggatgtct 35536640  T
Q  111 atgtat 116  Q
    ||||||    
T  35536639 atgtat 35536634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 48375701 - 48375806
Alignment:
Q  19 gaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatga 118  Q
    |||| ||||| ||| |||||| || |||||| || | ||  ||||||||||||| ||||| |  || ||||||||| ||||||||||||| |||| || |    
T  48375701 gaaagagaaaatgtgcttgtgcggggtccatgtgaccacacgtcagatttttgtatggattttcaggggtgtattgtcacctaagggtgtctatgaatca 48375800  T
Q  119 taactc 124  Q
    ||||||    
T  48375801 taactc 48375806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 35093685 - 35093593
Alignment:
Q  24 agaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||| |||||  ||||| || ||| | || ||||||||||||| |||||||||||  | ||||||| ||||||| | ||| |||||||    
T  35093685 agaaagtgtgcttgtatggagttcacatgaccacatgtcagatttttgcgtggatgtcaaatgttgtattgtcacctaaagttgtctatgtat 35093593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 152611 - 152511
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgttt 110  Q
    |||||||||||| |||||||||| ||||| ||  |||||||| | || |||||||||||||||||| ||||||| |||||||||||||| ||||||||||    
T  152611 gagaagaagaaagagaaagtgtatttgtgcgggatccatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacccaagggtgttt 152512  T
Q  111 a 111  Q
    |    
T  152511 a 152511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 10139 - 10209
Alignment:
Q  54 ctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactc 124  Q
    ||||||||||||||||| ||||||||||||  | ||||||||||||||| ||||| ||||||| |||||||    
T  10139 ctacgtgtcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcataactc 10209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 4099 - 4037
Alignment:
Q  54 ctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtat 116  Q
    ||||||||||||||||||||||| ||| || ||||||||||||| |||| ||||| |||||||    
T  4099 ctacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtat 4037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 959 - 1030
Alignment:
Q  54 ctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactca 125  Q
    ||||||||||| ||||||||||||||| ||  ||||||||||||||||| | ||| ||||||| || |||||    
T  959 ctacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcattactca 1030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 959 - 1030
Alignment:
Q  54 ctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccacctaagggtgtttatgtatgataactca 125  Q
    ||||||||||| ||||||||||||||| ||  ||||||||||||||||| | ||| ||||||| || |||||    
T  959 ctacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcattactca 1030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 17167 - 17077
Alignment:
Q  11 gagaagaagaaaaagaaagtgtacttgtggggagtccatatggctacgtgtcagatttttgtgtggatgtcaagaggtgtattgccaccta 101  Q
    ||||||| |||| ||||| ||| |||||| || |||||| || | || ||||||||||||||||||||||| || | |||||||| |||||    
T  17167 gagaagaggaaagagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtcgagggatgtattgcaaccta 17077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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