View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_high_73 (Length: 242)
Name: NF18007_high_73
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_73 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 33438216 - 33438429
Alignment:
| Q |
15 |
cataggcatggatatgaaaagcaaaaattaaatgtacaacttgttttcgaaagcaaatgtaaaactcatcaatcaacattaaatgtgctattagcaacaa |
114 |
Q |
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| T |
33438216 |
cataggcatggatatgaaaagcaaaaattaaatgtacaacttgttttcgaaagcaaatgtaaaactcatcaatcaacattaaatgtgctattattaacaa |
33438315 |
T |
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| Q |
115 |
aa-aataaacattaaatgggtaacctgtaaatgagttaattttacagcttaaatttcgttttcaaatctcccaatatattgttcaagttgttttgacttc |
213 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
33438316 |
aaaaataaacattaaatgggtaacctgtaaatgagttaattttacagcttaaatttcgttttcaaatcccccaatatattgatcaagttgttttgacttc |
33438415 |
T |
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| Q |
214 |
caagcattgaatca |
227 |
Q |
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|||||||||||||| |
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| T |
33438416 |
caagcattgaatca |
33438429 |
T |
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