View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_high_76 (Length: 239)
Name: NF18007_high_76
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_76 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 1794016 - 1793812
Alignment:
| Q |
16 |
caaaggcggaaagatagtatgcataagagagacatagagcatattaaaactcgacagactactcca--tgtcctgcctacacacaattgttacaaatcca |
113 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| |
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| T |
1794016 |
caaaggaggaaagatagtatgcataagagagacatagagcatattaaaactcgacagactacttcacatgtcgtgcctacacacaattgttacaaatcca |
1793917 |
T |
|
| Q |
114 |
aaaatcaaaggggggaggttcgtacaaaaagggcagataaaaagtatattgattgataaaagatgaaaaagaaggtacatgagtctctcatttaaaggac |
213 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1793916 |
aaaatcaaaggggggaggttcgtacaaaaaggacagataaaaagtatattgattgataaaagatgaaaaagaaggtacatgagtctctca-ttaaaggac |
1793818 |
T |
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| Q |
214 |
tctact |
219 |
Q |
| |
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|||||| |
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| T |
1793817 |
tctact |
1793812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 2007708 - 2007649
Alignment:
| Q |
160 |
tattgattgataaaagatgaaaaagaaggtacatgagtctctcatttaaaggactctactg |
220 |
Q |
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| T |
2007708 |
tattgattgataaa-gatgaaaaagaagatacatgagtctctgatttatagggttctactg |
2007649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 2007807 - 2007731
Alignment:
| Q |
87 |
tgcctacacacaattgttacaaatccaaaaatcaaaggggggaggttcgtacaaaaagggcagataaaaagtatatt |
163 |
Q |
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| T |
2007807 |
tgcctacatgcaattgttacaaatctataaatcaaagggggaaggtttgtatacataggaaaaataaaaagtatatt |
2007731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 20954255 - 20954211
Alignment:
| Q |
23 |
ggaaagatagtatgcataagagagacatagagcatattaaaactc |
67 |
Q |
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| T |
20954255 |
ggaaagatagtatgcataagagggacatagagcatattaaaactc |
20954211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 20936014 - 20935971
Alignment:
| Q |
23 |
ggaaagatagtatgcataagagagacatagagcatattaaaactc |
67 |
Q |
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| T |
20936014 |
ggaaagatagtatgcataaga-aggcatagagcatattaaaactc |
20935971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 39275156 - 39275112
Alignment:
| Q |
23 |
ggaaagatagtatgcataagagagacatagagcatattaaaactc |
67 |
Q |
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|||||||| |||||||||||||||||||| | | ||||||||||| |
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| T |
39275156 |
ggaaagattgtatgcataagagagacatataacctattaaaactc |
39275112 |
T |
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