View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_high_78 (Length: 237)
Name: NF18007_high_78
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_78 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 32514100 - 32513880
Alignment:
| Q |
1 |
atgatttgttgcacgctttttctccaatgactggatggataaatagtttggaatcaatgatcaagttactaaaggatcctgaagagcaatatgatttgta |
100 |
Q |
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| T |
32514100 |
atgatttgttgcacgctttttctccaatgactggatggataaatagtttggaatcaatgatcaagttactaaaggatcctgaagagcaatatgatttgta |
32514001 |
T |
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| Q |
101 |
taaaaatgatgtgaatgaaggcgttgttatgtcatttgaagaatttgccaatggaaattataatcatgtgaaaaatgcatatttttcatacacgaaacac |
200 |
Q |
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| T |
32514000 |
taaaaatgatgtgaatgaaggcgttgttatgtcattagaagaatttgccaatggaaattataatcatgtgaaaaatgcatatttttcatacacgaaacac |
32513901 |
T |
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| Q |
201 |
tgtgagcatgattgtcccatg |
221 |
Q |
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| T |
32513900 |
tgtgagcatgattgtcccatg |
32513880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 32543389 - 32543586
Alignment:
| Q |
1 |
atgatttgttgcacgctttttctccaatgactggatggataaatagtttggaatcaatgatcaagttactaaaggatcctgaagagcaatatgatttgta |
100 |
Q |
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||||||||||| || ||||||||||||||| ||||||| |||| |||| ||||||||||| | |||||||||||||||||||||||||| | |||||| |
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| T |
32543389 |
atgatttgttgtactgtttttctccaatgacaggatggaaaaattgtttagaatcaatgataagtttactaaaggatcctgaagagcaatacgctttgta |
32543488 |
T |
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| Q |
101 |
taaaaatgatgtgaatgaaggcgttgttatgtcatttgaagaatttgccaatggaaattataatcatgtgaaaaatgcatatttttcatacacgaaac |
198 |
Q |
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| T |
32543489 |
tttaaacagtaaacataatgaaaatgttatgtcattggaagaatttgccgttggaaattatagtcatgtaaaacctgcatatttatcatacaagaaac |
32543586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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