View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_high_85 (Length: 226)
Name: NF18007_high_85
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_85 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 32514512 - 32514287
Alignment:
| Q |
1 |
acttgctggtcaggagaatatctccctcaatcctattctcgagtaaaaaacatgatcaaagctcagaatctaaacaaatctcaagaagattctattctaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32514512 |
acttgctggtcaggagaatatctccctcaatcctattctcgagtaaaaaacatgatcaaagctcagaatctaaacaaatctcaagaagattctattctaa |
32514413 |
T |
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| Q |
101 |
gttgttttcatatnnnnnnntgtcatcacaatgatcctattaaactcatatggggtccaccaggaacaggcaaaacaaaaacagttgcttccatgctatt |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32514412 |
gttgttttcatataaaaaaatgtcatcacaatgatcctattaaactcatatggggtccaccaggaacaggcaaaacaaaaacagttgcttccatgctatt |
32514313 |
T |
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| Q |
201 |
ctgtctcctcaagttaagaatcagaa |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
32514312 |
ctgtctcctcaagttaagaatcagaa |
32514287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 32542977 - 32543202
Alignment:
| Q |
1 |
acttgctggtcaggagaatatctccctcaatcctattctcgagtaaaaaacatgatcaaagctcagaatctaaacaaatctcaagaagattctattctaa |
100 |
Q |
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||||||| |||||||| | ||||| || |||| |||| ||||| |||| || ||||||||||| ||||||||| | ||||| ||||| ||||||||| |
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| T |
32542977 |
acttgcttgtcaggagtaaatctcggtcgatccaattcccgagtcaaaactataatcaaagctcaaaatctaaacgagtctcagaaagatgctattctaa |
32543076 |
T |
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| Q |
101 |
gttgttttcatatnnnnnnntgtcatcacaatgatcctattaaactcatatggggtccaccaggaacaggcaaaacaaaaacagttgcttccatgctatt |
200 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
32543077 |
gttgtcttcatatgaagaagtgtcatcacaatgatcctattaaactcatatggggtccaccaggaactggcaaaacaaaaacagttgcatccatgctatt |
32543176 |
T |
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| Q |
201 |
ctgtctcctcaagttaagaatcagaa |
226 |
Q |
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||||||||||||||||||||||||| |
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| T |
32543177 |
ttgtctcctcaagttaagaatcagaa |
32543202 |
T |
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