View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_high_86 (Length: 225)
Name: NF18007_high_86
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_86 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 39136149 - 39135972
Alignment:
| Q |
26 |
tcatcatcatcatatgttgttggagacaccttggatttcttcatcgaaccacacaaagaattgttgtcatcgaataccctcttaactgacagtgtagttg |
125 |
Q |
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| T |
39136149 |
tcatcatcatcatatggtgttggagacaccttggatttcttcatcgaaccacacaaggaattgttgtcatcgaataccctcttaactgacagtgtagttg |
39136050 |
T |
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| Q |
126 |
tatccctcttcttatgaaaccttgctgataaagcatcatcatcatcatcttcacgagaagccgattgcgatgtatttt |
203 |
Q |
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| T |
39136049 |
tatccctcttcttatgaaaccttgctgataaagcatcatcatcatcatcttcacgagaagccgattgcgatgtatttt |
39135972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 39422722 - 39422869
Alignment:
| Q |
31 |
atcatcatatgttgttggagacaccttggatttcttcatcgaaccacacaaagaattgttgtcatcgaataccctcttaactgacagtgtagttgtatcc |
130 |
Q |
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||||||||||| ||| || ||||||||||||||||||||| |||| ||||| ||| |||||| ||| ||||| ||||||| | |||||| | |||||| |
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| T |
39422722 |
atcatcatatggtgtcggggacaccttggatttcttcatcaaaccgcacaaggaactgttgttatcagataccttcttaacaggcagtgtgatagtatcc |
39422821 |
T |
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| Q |
131 |
ctcttcttatgaaaccttgctgataaagcatcatcatcatcatcttca |
178 |
Q |
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| T |
39422822 |
ctcttcttaggaaaccttgctgacaaaggaacatcatcatcatcttca |
39422869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 174
Target Start/End: Original strand, 39416559 - 39416709
Alignment:
| Q |
24 |
cgtcatcatcatcatatgttgttggagacaccttggatttcttcatcgaaccacacaaagaattgttgtcatcgaataccctcttaactgacagtgtagt |
123 |
Q |
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| T |
39416559 |
cgtcattatcatcatatggtttcggggacaccttggatttcttcatcaaacaacataaggaattgttgttatcaaatgccctcttaattggcagtgtagt |
39416658 |
T |
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| Q |
124 |
tgtatccctcttcttatgaaaccttgctgataaagcatcatcatcatcatc |
174 |
Q |
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| | ||||||||||| |||||||||||| |||| | ||||||||||||| |
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| T |
39416659 |
agcacccctcttcttagcaaaccttgctgacaaaggaacatcatcatcatc |
39416709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 39474448 - 39474560
Alignment:
| Q |
26 |
tcatcatcatcatatgttgttggagacaccttggatttcttcatcgaaccacacaaagaattgttgtcatcgaataccctcttaactgacagtgtagttg |
125 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||| |||| ||||| ||| |||||| ||| |||||||||||||| | |||||| | | |
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| T |
39474448 |
tcatcatcatcatatgatgttggggacaccttggatttcttcatcaaaccgcacaaggaactgttgttatcaaataccctcttaacaggcagtgtgatag |
39474547 |
T |
|
| Q |
126 |
tatccctcttctt |
138 |
Q |
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|| |||||||||| |
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| T |
39474548 |
tacccctcttctt |
39474560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 19806548 - 19806401
Alignment:
| Q |
30 |
catcatcatatgttgttggagacaccttggatttcttcatcgaaccacacaaagaattgttgtcatcgaataccctcttaactgacagtgtagttgtatc |
129 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||| |||| |||||||||||||| |
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| T |
19806548 |
catcatcatatggtgttggagacaccttggatttcttcatcgaaccacacaaggaattgttgacatcggataccctcttgactggcagtgtagttgtatg |
19806449 |
T |
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| Q |
130 |
cctcttcttatgaaaccttgctgataaagcatcatcatcatcatcttc |
177 |
Q |
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||||||||||||||||| | |||||||| |||||||||||| ||||| |
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| T |
19806448 |
cctcttcttatgaaaccataatgataaagtatcatcatcatcttcttc |
19806401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 32984806 - 32984770
Alignment:
| Q |
101 |
accctcttaactgacagtgtagttgtatccctcttct |
137 |
Q |
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||||||||||||||||||||||| ||||||||||||| |
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| T |
32984806 |
accctcttaactgacagtgtagtagtatccctcttct |
32984770 |
T |
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