View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_high_9 (Length: 523)
Name: NF18007_high_9
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Original strand, 10935717 - 10936214
Alignment:
| Q |
18 |
gaagaagcatacttgtcctatttgcaagcaaggatgtaaggcgaaagatgcgtgtcggctttattttcaatcaattggagatgtgaaggaaggtgttgtt |
117 |
Q |
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| T |
10935717 |
gaagaagcatacttgtcctatttgcaagcaaggatgtaaggcgaaagatgcgtgtcggctttattttcaatcaattggagatgtgaaggaaggtgttgtt |
10935816 |
T |
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| Q |
118 |
actcagaagaatgttggtcttgaagaagattctggtgttttgaggaaggaagttaagagattggagggaaaagtttcggggcttagtacggttttggaga |
217 |
Q |
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| T |
10935817 |
actcagaagaatgttggtcttgaagaagattctggtgttttgaggaaggaagttaagagattggagggaaaagtttcggggcttagtacggttttggaga |
10935916 |
T |
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| Q |
218 |
aacaaactaaggagttagatgaacttaaagatgaggtattttccaatttcctataatttannnnnnnagcttaatttgttggataaattgggtggttttg |
317 |
Q |
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| T |
10935917 |
aacaaactaaggagttagatgaacttaaagatgaggtattttccaatttcctataatttatttttttagcttaatttgttggataaattgggtggttttg |
10936016 |
T |
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| Q |
318 |
ttga--nnnnnnnnaattgccgataaatttgggatggaaaaggcacgcgaagatttatgttttgtttgaaaagggaatgattatttctaatatttctgcg |
415 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10936017 |
ttgattttttttttaattgccgataaatttgggatggaaaaggcacgcgaagatttatgttttgtttgaaaagggaatgattatttctaatatttctgcg |
10936116 |
T |
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| Q |
416 |
cgaatgacttttactataactgagttaatgcttatgttgagtatggttcatattcgatgataagcgggaagatgctacgtgagagcacttgccctttg |
513 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10936117 |
agaatgatttttactataactgagtcaatgcttatgttgagtatggttcatattcgatgataagcgggaagatgctacgtgagagcacttgccctttg |
10936214 |
T |
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