View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_10 (Length: 538)
Name: NF18007_low_10
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Complemental strand, 8892705 - 8892186
Alignment:
| Q |
1 |
tttgtaaatttgggagtacaatttgattctttctaagaagtacaaaaattgtacataggaaacccacaattacatataattctacgtatgatatttggat |
100 |
Q |
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| T |
8892705 |
tttgtaaatttgggagtacaatttgattctttctaagaagtacaaaaattgtacataggaaacccacaattacgtataattttacgtatgatatttggat |
8892606 |
T |
|
| Q |
101 |
cttggacagttggaatcacttacaattttcaactatgtttgcgtcagttgagtttgtta-ttacgactttcaactatgtttgtgtaagttgagttcgtat |
199 |
Q |
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| T |
8892605 |
cttggacagttggaatcacttacaattttcaactatgtttgcgtcagttgagtttgttacttacgattttcaactatgtttgtgtaagttgagttcgtat |
8892506 |
T |
|
| Q |
200 |
gcatgcatgggtttccatgaagcaaactaaaataaaaagaatacttgcctctaactatcataaagtgctttgttttaataaaaagccaaagagaagtata |
299 |
Q |
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| T |
8892505 |
gcatgcatgggttttcatgaagcaaactaaaataaaaagaatacttgcctctaactatcataaagtgctttgttctaataaaaaaccaaagagaagcata |
8892406 |
T |
|
| Q |
300 |
catgtacattgtcactttagctcttgtctttacttcaagaatggg-aaacggttaaacttgtttactaagaaaggaagaaacattttaannnnnnnaatc |
398 |
Q |
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| T |
8892405 |
catgtacattgtcactttagctcttgtctttacttcaagaaagggaaaacggttaaacttgtttactaagaaagaaagaaacattttaatttttttaatc |
8892306 |
T |
|
| Q |
399 |
aagtattggttacaaaacttggtaaaaataagaaccttattcatgggtggtcgagtattaattgacaacatccgtaaataattatttagttggaagagta |
498 |
Q |
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| T |
8892305 |
aagtattggttacaaaacttggtaaaaataagaaccttattcatgggtggtcgagtattaattgacaacatccgtaaataaatatttagttggaagagta |
8892206 |
T |
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| Q |
499 |
aaaacttatccatgggtgat |
518 |
Q |
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| T |
8892205 |
aaaacttatccatgggtgat |
8892186 |
T |
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Back To:
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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 487 - 519
Target Start/End: Original strand, 31826830 - 31826862
Alignment:
| Q |
487 |
gttggaagagtaaaaacttatccatgggtgatc |
519 |
Q |
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| T |
31826830 |
gttggaagagtaaaaacttatccatggatgatc |
31826862 |
T |
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