View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_101 (Length: 208)
Name: NF18007_low_101
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_101 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 3065440 - 3065265
Alignment:
| Q |
21 |
gcttattgttactcgatccaactttattcacactcaattccacttctttaaaccctagattctcacgctattcttgctaaactaacaatctaacctaatc |
120 |
Q |
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| T |
3065440 |
gcttattgttactcgatccaactttattcacactcaattccacttctttaaaccctagattctcacgctattcttgctaaactaacaatctaacctaatc |
3065341 |
T |
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| Q |
121 |
ttaattacactttagtttaggattatagcttcaatttacttgttttaactattccggaagtcgtaatttaagttat |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
3065340 |
ttaattacactttagtttaggattatagcttcaatttacttgttttaactattccggaattcataatttaagttat |
3065265 |
T |
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