View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_103 (Length: 205)
Name: NF18007_low_103
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_103 |
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Alignment Details
Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 29185909 - 29185982
Alignment:
| Q |
15 |
gatgaaataagagaccaaaagaatgtaattaa-ttgagatgaagtgttctttacaaaataattagggaaatttg |
87 |
Q |
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| T |
29185909 |
gatgaaataagagaccaaaagaatgtaactaaattgagatgaagtgttctttacaaagtaattagggaaatttg |
29185982 |
T |
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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 29186045 - 29186081
Alignment:
| Q |
150 |
gataataacatatactacaaacttggcaatttcaccc |
186 |
Q |
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| T |
29186045 |
gataataacatatactacaaacttggcaatttcaccc |
29186081 |
T |
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