View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_12 (Length: 521)
Name: NF18007_low_12
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 263 - 513
Target Start/End: Original strand, 31844406 - 31844659
Alignment:
| Q |
263 |
taaattagggttagtagtagtgatagtagggttattaaggttaagattaagcatagaagaaccttgaat---ttgagctggttcatgagttgttggtggt |
359 |
Q |
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| T |
31844406 |
taaattagggttagtagtagtgatagtagggttattaaggttaagattaagcatagaagaaccttcattaagttgagctggttcatgagttgttggtggt |
31844505 |
T |
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| Q |
360 |
gatgattgtctaagccttgctctatcccttctatgaacattcatgtgacctccaagtgcttgagctgatttaaactcttttctacaaaagctacatgtgt |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31844506 |
gatgattgtctaagccttgctctatcccttctatgaacattcatgtgacctccaagtgcttgagctgatttaaactcttttctacaaaagctacatgtgt |
31844605 |
T |
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| Q |
460 |
atgatcttggtggccatggataacaaccattcatcatgtaatcttctgatgatg |
513 |
Q |
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| T |
31844606 |
atgatcttggtggccatggataacaaccattcatcatgtaatcttctgatgatg |
31844659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 31844147 - 31844347
Alignment:
| Q |
1 |
aacctatctccaaatccatccttaaaatctcacttttcttcaccattctactatcatcttcacattcaaaaccatccatctttgatttctctgaggtctt |
100 |
Q |
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| T |
31844147 |
aacctatctccaaatccatccttaaaatctcacttttcttcaccattccacaatcatcttcacattcaaaaccatccatctttgatttttctgaggtctt |
31844246 |
T |
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| Q |
101 |
tgtggtcaaagtagggttcgtcaaaataccatccacaacaacatatctattaaactcagaaggaggtgaaacaaacaaaggtaatgtgcaagtaataggc |
200 |
Q |
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| T |
31844247 |
tgtggtcaaagtagggttcaacaaaataccatccacaacaacatatctattaaactcagaaggaggtgaaacaaacaaaggtaatgtgcaagtaataggc |
31844346 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
31844347 |
t |
31844347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 375 - 476
Target Start/End: Original strand, 6889821 - 6889922
Alignment:
| Q |
375 |
cttgctctatcccttctatgaacattcatgtgacctccaagtgcttgagctgatttaaactcttttctacaaaagctacatgtgtatgatcttggtggcc |
474 |
Q |
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||||||||||| |||||||||||||||| || || || | |||||| ||||| |||||||| |||||||||||||||| | |||||||||||||||| |
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| T |
6889821 |
cttgctctatcttttctatgaacattcatatgtccacctaatgcttgtgctgacctaaactctcttctacaaaagctacaagaatatgatcttggtggcc |
6889920 |
T |
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| Q |
475 |
at |
476 |
Q |
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|| |
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| T |
6889921 |
at |
6889922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 475
Target Start/End: Complemental strand, 34522688 - 34522585
Alignment:
| Q |
372 |
agccttgctctatcccttctatgaacattcatgtgacctccaagtgcttgagctgatttaaactcttttctacaaaagctacatgtgtatgatcttggtg |
471 |
Q |
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| T |
34522688 |
agcctagctctatctctcctatgaatattcatgtgaccaccaagagcttgagcagacctaaactctcttttacaaaagttacatgaataaaatcttggtg |
34522589 |
T |
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| Q |
472 |
gcca |
475 |
Q |
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|||| |
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| T |
34522588 |
gcca |
34522585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 477
Target Start/End: Complemental strand, 4831043 - 4830959
Alignment:
| Q |
393 |
tgaacattcatgtgacctccaagtgcttgagctgatttaaactcttttctacaaaagctacatgtgtatgatcttggtggccatg |
477 |
Q |
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||||||||||||||||| ||||| ||||||||||| |||||| |||| |||||| |||| ||||| || ||||||||||||| |
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| T |
4831043 |
tgaacattcatgtgaccaccaagagcttgagctgaccggaactctcttctgcaaaaggtacaggtgtaggaccttggtggccatg |
4830959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 476
Target Start/End: Original strand, 30726619 - 30726717
Alignment:
| Q |
378 |
gctctatcccttctatgaacattcatgtgacctccaagtgcttgagctgatttaaactcttttctacaaaagctacatgtgtatgatcttggtggccat |
476 |
Q |
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|||||||| ||||||||||||||||||||||| || | |||||||| || |||||||| || |||| ||| ||||| ||| |||||||| |||||| |
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| T |
30726619 |
gctctatctcttctatgaacattcatgtgaccacctaaagcttgagcagacctaaactctcttttacagaagtgacatgagtaagatcttggaggccat |
30726717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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