View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_13 (Length: 519)
Name: NF18007_low_13
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 237 - 490
Target Start/End: Original strand, 35362643 - 35362897
Alignment:
| Q |
237 |
ttactatcgtccctcacgaccaacctcttctcctgcgacattttatgaggttccgaaagagaaagaaagcgtggatggagcttccatgagagagaaagag |
336 |
Q |
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| T |
35362643 |
ttactatcgtccctcacgaccaacctcttctccggtgacattttctgaggttccgaaagagaaagaaagcgtggatggagcttccatgagagagaaagag |
35362742 |
T |
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| Q |
337 |
agccatctgttttggtttttta--attacgaagtcattccaaaaacaattttttaaaatcaacacttgccacatcagcaagtggtacaagctctgtacaa |
434 |
Q |
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| T |
35362743 |
agccatatgttttgttttttttttattacgaagtcattccaaaa-caattttttaaaattaacacttgccacatcagcaagtggtacaagctctgtacaa |
35362841 |
T |
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| Q |
435 |
gttggagtggtcgatttatcatttcccaaaataaaagctcaaataataatgaataa |
490 |
Q |
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| T |
35362842 |
gttggagtggtcgatttatcatttcccaaaataaaagctcaaataataatggataa |
35362897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 5e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 16652380 - 16652182
Alignment:
| Q |
14 |
ttctcctttacattcattagctcctatactatctataatctaaaacatcaaggtaattaataagagaacatacattgaaatctaaactcaactatatata |
113 |
Q |
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| T |
16652380 |
ttctcctttacattcattagctcctatactatctataatctaaaacatcaaggtaattaataagagaacatacattgaaatctaaactcaactatat--a |
16652283 |
T |
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| Q |
114 |
tatcactatgactaacaaaatctaagaatataaagctaagcaacagtcnnnnnnntaaagctatagatcaaaatatagttgatgctagaagagctccatg |
213 |
Q |
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| T |
16652282 |
tatcactatgactaacaaaatctaagaatataaagctaagcaacagtcaaaaaaataaagctatagatcaaaacatagttgatgctagaagagctccatg |
16652183 |
T |
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