View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_16 (Length: 508)
Name: NF18007_low_16
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 207 - 490
Target Start/End: Original strand, 33485046 - 33485331
Alignment:
| Q |
207 |
attaaaatttactaccacatatctagtcactagccagtacattatcagtgaagatatatcatagtggtgaagaaatggatcatcaaacttttctttgcca |
306 |
Q |
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| T |
33485046 |
attaaaatttacaaccacatatctagccactagccagtacattatcagtgaagatatatcatagtggtgaagaaatggatcatcaaacttttctttgcca |
33485145 |
T |
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| Q |
307 |
aaannnnnnnnnnnnnnnnnn-atgattgaagcgtcgaccttagtttccttgccactaacttgcatcttcaatagctagttaactacct-tgaagtgttt |
404 |
Q |
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| T |
33485146 |
agattttatttttttattttttatgattgaagcgtcgaccttagtttccttgccactaacttgcatcttcaatagctagttaactacctctggagtgttt |
33485245 |
T |
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| Q |
405 |
gacaagaactttgtaaagaacaattttgttgataggctttgcaatcattattatttgatctcgaataagttcaagtcgacctttgt |
490 |
Q |
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| T |
33485246 |
gacaagaactttgtaaagaacaattttgttcataggctttgcaatcattattatttgatctcgaataagtttaagtcgacctttgt |
33485331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 33484791 - 33484983
Alignment:
| Q |
7 |
gtccaagaatatcaaatccctaaataagaaacgcaaattttcaccatctttcatcaatcaaaggatattcttaaaagagggataaaaagttctattaacc |
106 |
Q |
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| T |
33484791 |
gtccaaaaacatcaaatccttaaataagaaacgcaaattttcaccatctttcatcaatcaaaggatattcttaaaagagggataaaaagttctattaacc |
33484890 |
T |
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| Q |
107 |
ctatctt-ttgagaacctaacattctcattactgcaaaatttaattcctctgttactaccatattgaatacatactttttgggctcatttgaa |
198 |
Q |
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| T |
33484891 |
ctatcttgttgagaacctaacattctcattactgcaaaatttaatccctctgttactaccatattgaatacatactttttgggctcatttgaa |
33484983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 449
Target Start/End: Complemental strand, 49862260 - 49862177
Alignment:
| Q |
367 |
tgcatcttcaatagctagttaactacct-tgaagtgtttgacaagaactttgtaaagaacaattttgttgataggctttgcaat |
449 |
Q |
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| T |
49862260 |
tgcatctccaatagctagttgactatctctggagtgtttgacaagagcttcgtaaagaacagttttgttcatagacttagcaat |
49862177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 8033163 - 8033218
Alignment:
| Q |
329 |
tgattgaagcgtcgaccttagtttccttgccactaacttgcatcttcaatagctag |
384 |
Q |
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| T |
8033163 |
tgattgaagcatcacccttaatttccttgccactaacttgcatctccaataactag |
8033218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 411
Target Start/End: Original strand, 8046611 - 8046673
Alignment:
| Q |
350 |
tttccttgccactaacttgcatcttcaatagctagttaactacct-tgaagtgtttgacaaga |
411 |
Q |
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| T |
8046611 |
tttccttgccactaacttgcatctccaataactagctgactatctctggagtgtttgacaaga |
8046673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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