View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18007_low_17 (Length: 497)
Name: NF18007_low_17
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Complemental strand, 27215343 - 27214876
Alignment:
| Q |
17 |
caaaaacctcagctatcaacgacaggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27215343 |
caaaaacctcagctatcaacgacaggtttcgagttgggatctggagttactatttcagtggaccttccatcaccatggtctggtcgattttggggccgaa |
27215244 |
T |
|
| Q |
117 |
ccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
27215243 |
ccggatgcttcaacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaactcggttgcaatggtgctggcgcaatcccaccagcaac |
27215144 |
T |
|
| Q |
217 |
attggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27215143 |
attggtagaaataaccgtagcaacaaacgggggacaagatttctatgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggt |
27215044 |
T |
|
| Q |
317 |
gggagtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtgtgtccttcagagctccaggtgattggttctgatgggagtgtggttgctt |
416 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
27215043 |
gggagtggtgactgcaaaacctccagttgtccagggaacatcaatgttgtgtgtccttcagagctccaagtgataggtactgatgggagtgtggttgctt |
27214944 |
T |
|
| Q |
417 |
gtaagagcgcttgtttggctttaaacgaggataaatattgttgccgtggagattacaataccgaagaa |
484 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27214943 |
gtaagagcgcttgtttggctttaaatgaagataaatattgttgtcgtggagattacaataccgaagaa |
27214876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Original strand, 27443558 - 27444025
Alignment:
| Q |
17 |
caaaaacctcagctatcaacgacaggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27443558 |
caaaaacctcagctatcaacgacaggtttcgagttgggatctggagttactatttcagtggaccttccatcaccatggtctggtcgattttggggccgaa |
27443657 |
T |
|
| Q |
117 |
ccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
27443658 |
ccggatgcttcaacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaactcggttgcaatggtgctggcgcaatcccaccagcaac |
27443757 |
T |
|
| Q |
217 |
attggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27443758 |
attggtagaaataaccgtagcaacaaacgggggacaagatttctaagatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggt |
27443857 |
T |
|
| Q |
317 |
gggagtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtgtgtccttcagagctccaggtgattggttctgatgggagtgtggttgctt |
416 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
27443858 |
gggagtggtgactgcaaaacctccagttgtccagggaacatcaatgttgtgtgtccttcagagctccaagtgataggtactgatgggagtgtggttgctt |
27443957 |
T |
|
| Q |
417 |
gtaagagcgcttgtttggctttaaacgaggataaatattgttgccgtggagattacaataccgaagaa |
484 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27443958 |
gtaagagcgcttgtttggctttaaatgaagataaatattgttgtcgtggagattacaataccgaagaa |
27444025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Complemental strand, 27221305 - 27220838
Alignment:
| Q |
17 |
caaaaacctcagctatcaacgacaggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
27221305 |
caaaaacctcagctatcaacgacaggtttcgagttgggatctggagttactatttcagtggaccttccatcaccatggtcgggtagattttggggccgaa |
27221206 |
T |
|
| Q |
117 |
ccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
27221205 |
ccggatgcttcaacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaagtcggttgcaacggtgctggggcaatcccaccagcaac |
27221106 |
T |
|
| Q |
217 |
attggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggt |
316 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27221105 |
attggtagaaataacggtagcaacagacgggggacaagacttctacgatgtgagcaatgtggacggattcaacgtgccaatgtctgtaacgccacaaggt |
27221006 |
T |
|
| Q |
317 |
gggagtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtgtgtccttcagagctccaggtgattggttctgatgggagtgtggttgctt |
416 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||| || |||||| |||||||||||||| |||| | |
|
|
| T |
27221005 |
gggagtggtgactgcaaaacctccagttgtccagggaacattaatgttgtgtgcccttcagagctccaagttattggtactgatgggagtgtgattgcct |
27220906 |
T |
|
| Q |
417 |
gtaagagcgcttgtttggctttaaacgaggataaatattgttgccgtggagattacaataccgaagaa |
484 |
Q |
| |
|
||||||| ||||||||||||||||| || |||||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
27220905 |
gtaagagtgcttgtttggctttaaatgaagataaatattgttgtcgtggagatttcaatactgaagaa |
27220838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Complemental strand, 27433052 - 27432585
Alignment:
| Q |
17 |
caaaaacctcagctatcaacgacaggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaa |
116 |
Q |
| |
|
||||| |||||||||||||| || ||||| ||||| ||| |||||| || ||| ||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
27433052 |
caaaagcctcagctatcaacaacgggttttgagttaggacctggagcaacaattgaggtggaccttccatcaccatggtcgggtcgattttggggacgaa |
27432953 |
T |
|
| Q |
117 |
ccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaac |
216 |
Q |
| |
|
||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
27432952 |
ccggatgctccaacaacaatggaaagttcagttgtgccaccgccgattgtgcctctggtcaagtcggttgtaacggtgctggcgcaatcccaccagcaac |
27432853 |
T |
|
| Q |
217 |
attggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27432852 |
attggtagaaataaccgtagcaacaaacgggggacaagatttctatgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggt |
27432753 |
T |
|
| Q |
317 |
gggagtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtgtgtccttcagagctccaggtgattggttctgatgggagtgtggttgctt |
416 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
27432752 |
gggagtggtgactgcaaaacctccagttgtccagggaacattaatgttgtgtgcccttcagagctccaagtgataggttctgatgggagtgtggttgctt |
27432653 |
T |
|
| Q |
417 |
gtaagagcgcttgtttggctttaaacgaggataaatattgttgccgtggagattacaataccgaagaa |
484 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27432652 |
gtaagagcgcttgtttggctttaaacgaagataaatattgttgtcgtggagattacaataccgaagaa |
27432585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 484
Target Start/End: Complemental strand, 27207972 - 27207505
Alignment:
| Q |
17 |
caaaaacctcagctatcaacgacaggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaa |
116 |
Q |
| |
|
||||||||||||||||| || || ||||| ||||| ||| |||||| || ||| | ||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
27207972 |
caaaaacctcagctatcgacaacgggttttgagttaggacctggagcaacaattgcggtggaccttccatcaccatggtcgggaagattttggggccgaa |
27207873 |
T |
|
| Q |
117 |
ccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaac |
216 |
Q |
| |
|
| ||||||| | ||||||| |||| ||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27207872 |
ctggatgctccgacaacaacggaaggttcagctgcgccaccgccgattgtgcctccggtcaagtcggttgcaacggtgctggcgcaatcccaccagcaac |
27207773 |
T |
|
| Q |
217 |
attggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggt |
316 |
Q |
| |
|
| ||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||| |||| |||||||||| |
|
|
| T |
27207772 |
actggtagaaataacaatagcatccaacgggggacaagatttctacgatgtgagcaatgttgatgggttcaatgtgcccatgtccgtaatgccacaaggt |
27207673 |
T |
|
| Q |
317 |
gggagtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtgtgtccttcagagctccaggtgattggttctgatgggagtgtggttgctt |
416 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27207672 |
gggagtggtgactgcaaaaccgctagttgtcctaggaacattaatgttgtgtgtccttcagagctccaggtgattggttctgatgggagtgtgtttgctt |
27207573 |
T |
|
| Q |
417 |
gtaagagcgcttgtttggctttaaacgaggataaatattgttgccgtggagattacaataccgaagaa |
484 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
27207572 |
gtaagagcgcttgtttggctttaaaggaagataaatattgttgtcgtggagatttcaatactgaagaa |
27207505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 17 - 438
Target Start/End: Complemental strand, 27389266 - 27388845
Alignment:
| Q |
17 |
caaaaacctcagctatcaacgacaggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaa |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||| |||||| || | |||| ||| |||| || |||||||| ||||||||||||| ||||| |
|
|
| T |
27389266 |
caaaaacctcagctatcaacaacaggtttcgagttaggacctggagcaacgaactcagcggaaattccttccccatggtcaggtcgattttgggcccgaa |
27389167 |
T |
|
| Q |
117 |
ccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaac |
216 |
Q |
| |
|
||||||||| | |||||| ||| |||||| |||||||| ||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||||| |
|
|
| T |
27389166 |
ccggatgctcaaccaacaacggacagtttacttgtgccactgccgattgtgcatctggtcaagttgcatgcaatggtgctggcgcaatcccaccagcaac |
27389067 |
T |
|
| Q |
217 |
attggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggt |
316 |
Q |
| |
|
||||| ||||| || || ||| |||| || |||||||||||||||||||||||||| || || || ||||||||||||||||| ||||| |||||||| |
|
|
| T |
27389066 |
tttggttgaaattacagtggcatcaaatggaggacaagatttctacgatgtgagcaacgttgacggtttcaacgtgccaatgtccgtaactccacaaggc |
27388967 |
T |
|
| Q |
317 |
gggagtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtgtgtccttcagagctccaggtgattggttctgatgggagtgtggttgctt |
416 |
Q |
| |
|
|| ||||| || |||||| | || || ||||| | ||||| || ||||||||| | ||||| || | | ||||||||||| ||||| ||||||| |
|
|
| T |
27388966 |
ggaagtggcgattgcaaatcctctagctgtccagcaaacatcaactctgtgtgtcccgcggagcttcaattaaaaggttctgatggaagtgtcgttgctt |
27388867 |
T |
|
| Q |
417 |
gtaagagcgcttgtttggcttt |
438 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
27388866 |
gtaagagtgcttgtttggcttt |
27388845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 90 - 482
Target Start/End: Complemental strand, 27410149 - 27409757
Alignment:
| Q |
90 |
catggtctggtcgattttggggccgaaccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaa |
189 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | |||||| | ||||||||| |||||||| |||||||||| ||||||||||| || ||||| |
|
|
| T |
27410149 |
catggtctggtcgattttgggcaagaaccggatgctcaatcaacaaagaaaagtttagttgtgccacagccgattgtgggtctggtcaagtggggtgcaa |
27410050 |
T |
|
| Q |
190 |
cggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaac |
289 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||| ||| | ||| |||| || |||||||||||||||||||||||||| || || || |||||| |
|
|
| T |
27410049 |
tggtgctggcgcaatcccaccagcaactttagttgaaattaccatggcatcaaatggaggacaagatttctacgatgtgagcaacgttgacgggttcaac |
27409950 |
T |
|
| Q |
290 |
gtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtgtgtccttcagagctccaggtga |
389 |
Q |
| |
|
|||||||| | |||||| ||||||||||||| ||| |||||| | | |||||||| | || || || | ||||||||| |||| || || || | |
|
|
| T |
27409949 |
gtgccaatttttgtaactccacaaggtgggaatggcccttgcaaagccgctagttgtccagcaaatatcaacgctgtgtgtcccgcagaacttcaagtaa |
27409850 |
T |
|
| Q |
390 |
ttggttctgatgggagtgtggttgcttgtaagagcgcttgtttggctttaaacgaggataaatattgttgccgtggagattacaataccgaag |
482 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| |||||||| || ||| |||||||||| |||||| |||||||||||||| |
|
|
| T |
27409849 |
aaggttctgatgggagtgtcgttgcttgtaagagtgcttgcttggcttttaatacagatcaatattgttgtcgtggaagttacaataccgaag |
27409757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 27455202 - 27455087
Alignment:
| Q |
16 |
acaaaaacctcagctatcaacgacaggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccga |
115 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||||||||| |||| || |||||||||||||||||||||||||| || ||| ||||||| |||||| |
|
|
| T |
27455202 |
acaaaaacctcagctatgaacgacaagtttcgacttgggatctagagt-actatttcagtggaccttccatcaccatgatcaggttgattttgaggccga |
27455104 |
T |
|
| Q |
116 |
accggatgcttcaacaa |
132 |
Q |
| |
|
| |||||||| |||||| |
|
|
| T |
27455103 |
atcggatgctccaacaa |
27455087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 352 - 439
Target Start/End: Complemental strand, 20952617 - 20952530
Alignment:
| Q |
352 |
gaacataaatgttgtgtgtccttcagagctccaggtgattggttctgatgggagtgtggttgcttgtaagagcgcttgtttggcttta |
439 |
Q |
| |
|
|||||| ||| |||||||||||| ||||||||| |||| |||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
20952617 |
gaacattaatattgtgtgtccttaagagctccaagtgaccggttctgatgggagtgtggtggcttgtaaaagcgcttgtttggcttta |
20952530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 274
Target Start/End: Complemental strand, 27454844 - 27454712
Alignment:
| Q |
142 |
gtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaaca |
241 |
Q |
| |
|
|||||| || ||||| ||||||||| ||| |||||| | || | ||| | ||| || |||||||||||||||||||||||||||||||| || || || |
|
|
| T |
27454844 |
gtttagttgggccactgccgattgtatctccggtcaaatgggttccaatgatgcaggtgcaatcccaccagcaacattggtagaaataacggttacatca |
27454745 |
T |
|
| Q |
242 |
aacgggggacaagatttctacgatgtgagcaat |
274 |
Q |
| |
|
|| || ||||||||||||| |||||||||||| |
|
|
| T |
27454744 |
gacaggagacaagatttctatgatgtgagcaat |
27454712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 103 - 320
Target Start/End: Original strand, 27415924 - 27416142
Alignment:
| Q |
103 |
attttggggccgaa-ccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgc |
201 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||| || ||||| ||||| |||||||| | ||||||| ||||||||||| | ||||| ||||||| || |
|
|
| T |
27415924 |
attttgggcccgaaaccggatgctcaaacaataacggaaattttagttgtgccacaggtgattgtgggtctggtcaagttgagtgcaatggtgctgacgt |
27416023 |
T |
|
| Q |
202 |
aatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtct |
301 |
Q |
| |
|
||| |||||||||||||||| || || | || ||| |||| || ||||||||||| ||| ||||||||| |||| ||||| |||||| | ||| |
|
|
| T |
27416024 |
aattacaccagcaacattggttgacattaaagtggcatcaaatggaggacaagatttatacagtgtgagcaacacttatgggttcaatgtgccagtatct |
27416123 |
T |
|
| Q |
302 |
gtaacgccacaaggtggga |
320 |
Q |
| |
|
||||| |||| |||||||| |
|
|
| T |
27416124 |
gtaactccacgaggtggga |
27416142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 20952716 - 20952648
Alignment:
| Q |
244 |
cgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccaca |
312 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| | ||||| ||| ||||||| |||||||||| |
|
|
| T |
20952716 |
cgggggacaagatttatatgatgtgagcaatgtggacaggttcaatgtgtcaatgtcaataacgccaca |
20952648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 98 - 300
Target Start/End: Original strand, 41457693 - 41457895
Alignment:
| Q |
98 |
ggtcgattttggggccgaaccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctg |
197 |
Q |
| |
|
||||| |||||||||||||||||||||| | ||| ||||| ||||| || ||||| || ||||||| ||| || ||||||| ||||| ||||| | |
|
|
| T |
41457693 |
ggtcggttttggggccgaaccggatgctcgagcaatgcaggaaaatttagttgcgccactgctgattgtggctccggccaagtcgcttgcaatggtgccg |
41457792 |
T |
|
| Q |
198 |
gcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaat |
297 |
Q |
| |
|
| ||| | |||||||||||||| | |||| || ||||| | | ||||| |||||||| | ||||||| | |||||||| || || |||||||| || || |
|
|
| T |
41457793 |
gtgcagttccaccagcaacattagcagaactacacgtagaagccaacggtggacaagactactacgatataagcaatgttgacgggttcaacgtacccat |
41457892 |
T |
|
| Q |
298 |
gtc |
300 |
Q |
| |
|
||| |
|
|
| T |
41457893 |
gtc |
41457895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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