View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_19 (Length: 486)
Name: NF18007_low_19
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_19 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: scaffold0137 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 21 - 470
Target Start/End: Complemental strand, 35778 - 35329
Alignment:
| Q |
21 |
tgcaatgaaattgtgagtattgggaaggtttcaacaaattaataggattagtgggtgtattaggaaggtttccataaattaactggataagtgggagagg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35778 |
tgcaatgaaattgtgagtattgggaaggtttcaacaaattaataggattagtgggtgtattaggaaggtttccataaattaactggataagtgggagagg |
35679 |
T |
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| Q |
121 |
aactaacagccacaggtctcaaaacaaaaacgctctttatagggttttgaacattaatgattgattttaagtaaccgaggtcacggacccagaattgtga |
220 |
Q |
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| T |
35678 |
aactaacagccacaggtctcaaaacaaaaacgctctttatagggttttgaacattaatgattgattttaagtaaccgaggtcacggacccagaattgtga |
35579 |
T |
|
| Q |
221 |
gggagtcgaacagaaccagcttgcagaagctcacgattccaccattcttacatctttgcgcagcaatccctgcgcacccaccaatttgtgtttcaagcca |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35578 |
gggagtcgaacagaaccagcttgcagaagctcacgattccaccattcttacatctttgcgcagcaatccctgcgcacccaccaatttgtgtttcaagcca |
35479 |
T |
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| Q |
321 |
tgcacaaacacaaggggttgcaagatgtagcagcgtacgattctacgttctgaatctagtctaccatgactacgctatttaacagtactgtcaatcacag |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35478 |
tgcacaaacacaaggggttgcaagatgtagcagcgtacgattctacgttctgaatctagtctaccatgactacgctatttaacagtactgtcaatcacag |
35379 |
T |
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| Q |
421 |
atcacagaaaatagctattcgtacaaactccactatagccactataaaac |
470 |
Q |
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| T |
35378 |
atcacagaaaatagctattcgtacaaactccactatagccactataaaac |
35329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 22 - 470
Target Start/End: Complemental strand, 3923854 - 3923400
Alignment:
| Q |
22 |
gcaatgaaattgtgagtattgggaaggtttcaacaaattaataggattagtgggtgtattaggaaggtttccataaattaactggataagtgggagagga |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3923854 |
gcaatgaaattgtgagtattgggaaggtttcaacaaattaataggattagtgggtgtattaggaaggtttccataaattaactggataagtgggcgagga |
3923755 |
T |
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| Q |
122 |
actaacagccacaggtctcaaaacaaaaacgctctttatagggttttgaacattaatgattgattttaagtaaccgaggtcacggacccagaattgtgag |
221 |
Q |
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| T |
3923754 |
actaacagccacaggtctcaaaacaaaaacgctctttttagggttttgaacattaatgattggttttaagtaaccgaggtcacggacccggaattgtgag |
3923655 |
T |
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| Q |
222 |
ggagtcgaacagaaccagcttgcagaagctcacgattccaccattcttacatctttgcgcagcaatccctgcgcacccaccaatttgtgtttcaagccat |
321 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
3923654 |
ggagtcgaatagaaccagcttgcagaagcgcacgattccaccattcttacatctttgcgcagcgatccctgcgcacccaccaatttgcgtttcaagccat |
3923555 |
T |
|
| Q |
322 |
gcacaaacacaaggggttgcaagatgtagcagcgtacgattctacgttctga------atctagtctaccatgactacgctatttaacagtactgtcaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3923554 |
gcacaaacacaaggggttgcaagatgtagcagcgtacgattctacgttctgaatcgcgatctagtctaccatgactacgctatttaacagtactgtcaat |
3923455 |
T |
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| Q |
416 |
cacagatcacagaaaatagctattcgtacaaactccactatagccactataaaac |
470 |
Q |
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| T |
3923454 |
cacagatcacagaaaatagctattcgtacaaactccactatagccactataaaac |
3923400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 20501410 - 20501464
Alignment:
| Q |
37 |
gtattgggaaggtttcaacaaattaataggattagtgggtgtattaggaaggttt |
91 |
Q |
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|||||||||||||||| || ||||||| ||||||||||||||||| ||||||||| |
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| T |
20501410 |
gtattgggaaggtttccacgaattaatgggattagtgggtgtatttggaaggttt |
20501464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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