View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_2 (Length: 938)
Name: NF18007_low_2
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 837; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 837; E-Value: 0
Query Start/End: Original strand, 17 - 922
Target Start/End: Original strand, 39028402 - 39029311
Alignment:
| Q |
17 |
catactgtttctccatctctcttatctcccttgttgcctcaaacccatccttcactggcatctgtccaattcattgtggattaagttaagcacattgacc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39028402 |
catactgtttctccatctctcttatctcccttgttgcctcaaacccatccttcactggcatctgtccaattcattgtggattaagttaagcacattgacc |
39028501 |
T |
|
| Q |
117 |
aaaaaataaagctaaagttatattacaatgaaaaataaattatcataaggaggattagtaaaatg-------agaagtggaaaccatattgtataatcat |
209 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39028502 |
aaaaaataaagctaaagttatattacaatgaaaaataaattatcataaggaggattagtaaaatgactaatgagaagtggaaaccatattgtataatcat |
39028601 |
T |
|
| Q |
210 |
taattacctgacaatccattaagatataatcataaggaggattagtaaaatcctttgttaaaccctcttgaacagttctcacagcctcttcaccattctc |
309 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39028602 |
taattacctgacaatccattaagatataatcataaggaggattagtaaaatccttggttaaaccctcttgaacagttctcacagcctcttcaccattctc |
39028701 |
T |
|
| Q |
310 |
acattggtcaacagtagtcacaccaagagatctcaaagtagccatacaaatctttctcagcataggactatcatcaacaaccaaaaacttctttccactt |
409 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39028702 |
acattggtcaatagtagtcacaccaagagatctcaaagtagccatacaaatctttctcagcataggactatcatcaacaaccaaaaacttctttccactt |
39028801 |
T |
|
| Q |
410 |
aatggttcaggattgcttgattctcctccagattcttctatttcaccttgatgaacagaaccttttcttcccattttaacatatgatttttgtgttccct |
509 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39028802 |
aatggttcaggattgcttgattctcctccagattcttctatttcaccttgatgaacagaaccttttcttcccattttaacataggatttttgtgttccct |
39028901 |
T |
|
| Q |
510 |
tccagcattgtcccacacttagacacacactttcatcattggttggttcttgtgatcttaattcatttcttggtttactagaactgcttatccaactacc |
609 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
39028902 |
tccagcattgtcccacacttagacacacactttcatcattggttggttcttgtgatctcaattcatttcttggtttactagaattgcttatccaactacc |
39029001 |
T |
|
| Q |
610 |
accaaactcaggaataagcttaataacttggaacaatctactaccatgaaatggttttgatatcacaatatcatcttgatcaattgcttggtaatcaaca |
709 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39029002 |
accaaactcaggaagaagcttaataacttggaacaatctactaccatgaaatggttttgatatcacattatcatcttgatcaattgcttggtaatcaaca |
39029101 |
T |
|
| Q |
710 |
ctactctcaaaaggcttttccaaccaaacaactttactaggattgagaagatctttcttgaagtttgacacaatcttacaaagcttagaaaatggtcctg |
809 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39029102 |
ctactctcaaaaggcttttccaaccaaacaactttactaggattgagaagatctttcttgaagtttgacacaatcttacaaagcttagaaaatggtcctg |
39029201 |
T |
|
| Q |
810 |
catttgcatcaatgataatcaaaataaaacttggtgcagctccattgtttttcttcttgaacatcgaagatagatattcatttccatgatccatagcttt |
909 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39029202 |
catttgcatcaatgataatcagaacaaaacttggtgcagctccattgttt---ttcttgaacatcgaagatagatattcatttccatgatccatagcttt |
39029298 |
T |
|
| Q |
910 |
gaaaggaactctt |
922 |
Q |
| |
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||||||||||||| |
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| T |
39029299 |
gaaaggaactctt |
39029311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 615 - 694
Target Start/End: Original strand, 40896023 - 40896102
Alignment:
| Q |
615 |
actcaggaataagcttaataacttggaacaatctactaccatgaaatggttttgatatcacaatatcatcttgatcaatt |
694 |
Q |
| |
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||||||||| |||| | || ||||||||||| | |||||| ||||||||||| ||||| ||||| |||| |||||||||| |
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| T |
40896023 |
actcaggaagaagcattatgacttggaacaaacgactaccgtgaaatggtttcgatatgacaatgtcattttgatcaatt |
40896102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 40895537 - 40895593
Alignment:
| Q |
25 |
ttctccatctctcttatctcccttgttgcctcaaacccatccttcactggcatctgt |
81 |
Q |
| |
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||||||||||||| |||| ||||||||||||||| |||||| |||| ||||||||| |
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| T |
40895537 |
ttctccatctctcgtatccgccttgttgcctcaaatccatccatcaccggcatctgt |
40895593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 40895721 - 40895761
Alignment:
| Q |
214 |
tacctgacaatccattaagatataatcataaggaggattag |
254 |
Q |
| |
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|||||| |||||||||||||| ||||||||||||||||||| |
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| T |
40895721 |
tacctggcaatccattaagatgtaatcataaggaggattag |
40895761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 6996027 - 6996067
Alignment:
| Q |
214 |
tacctgacaatccattaagatataatcataaggaggattag |
254 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||| |
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|
| T |
6996027 |
tacctggcaatccattaagatgtaatcataaggaggattag |
6996067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 694
Target Start/End: Original strand, 6996296 - 6996375
Alignment:
| Q |
615 |
actcaggaataagcttaataacttggaacaatctactaccatgaaatggttttgatatcacaatatcatcttgatcaatt |
694 |
Q |
| |
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||||||||| |||| | || ||||||||||| | |||||| ||||||||||| ||||| ||||| || | |||||||||| |
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| T |
6996296 |
actcaggaagaagcattatgacttggaacaaacgactaccgtgaaatggtttcgatatgacaatgtcgttttgatcaatt |
6996375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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