View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_26 (Length: 416)
Name: NF18007_low_26
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 147 - 402
Target Start/End: Complemental strand, 42763348 - 42763092
Alignment:
| Q |
147 |
acaggtgtttggccagaatccaagagttttagtgacgaaggatttggactgatcccaaaaaagtggcgtggaatctgtcaagttactaaaggaaatccag |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42763348 |
acaggtgtttggccagaatccaagagttttagtgacgaaggatttggactgatcccaaaaaagtggcgtggaatctgtcaagttactaaaggaaatccag |
42763249 |
T |
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| Q |
247 |
ataactttcactgcaataggtcttttcttgtaacgacattaaatcattcagaatttgctatggt-ttttaaaaactaatctttacaaattatgatggtaa |
345 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42763248 |
ataactttcactgcaacaggtctttccttgtaacgacattaaatcatttagaatttgctatggttttttaaaaactaatctttacaaattatgatggtaa |
42763149 |
T |
|
| Q |
346 |
acgtttaagcttcagaagatatacaagtttaaattgagcttagtatatcaccatgat |
402 |
Q |
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| T |
42763148 |
acgtttaagcttcagaagatatacaagtttaaattgagcttagtatataaccatgat |
42763092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 42733425 - 42733546
Alignment:
| Q |
149 |
aggtgtttggccagaatccaagagttttagtgacgaaggatttggactgatcccaaaaaagtggcgtggaatctgtcaagttactaaaggaaatccagat |
248 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||| | ||||| ||||| ||||||||||| |||||||||| |||||| ||||||||| |
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| T |
42733425 |
aggtgtttggccagaatcaaagagttttagtgatgaaggatttgggccaatccccaaaaaatggcgtggaatttgtcaagttattaaaggcaatccagat |
42733524 |
T |
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| Q |
249 |
aactttcactgcaataggtctt |
270 |
Q |
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|||||||| ||||| ||||||| |
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| T |
42733525 |
aactttcattgcaacaggtctt |
42733546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 42763482 - 42763414
Alignment:
| Q |
13 |
aatatcttgagttgaaatctaaaattatcttcggttgaaatatgattgattgcttaattatatagtata |
81 |
Q |
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| T |
42763482 |
aatatcttgagttgaaatctaaaattatcttcggttgaaatatgattgattgcttaattatatagtata |
42763414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 147 - 269
Target Start/End: Complemental strand, 42744304 - 42744182
Alignment:
| Q |
147 |
acaggtgtttggccagaatccaagagttttagtgacgaaggatttggactgatcccaaaaaagtggcgtggaatctgtcaagttactaaaggaaatccag |
246 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||| ||| | || || |||||||||| ||||| |||||| ||||||||||||||| | |
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| T |
42744304 |
acaggtgtttggccagaatctaagagttttagtgatgaaggatatggtccaattcctaaaaagtggcatggaacttgtcaaactactaaaggaaatcccg |
42744205 |
T |
|
| Q |
247 |
ataactttcactgcaataggtct |
269 |
Q |
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|||||||||||||||| |||||| |
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| T |
42744204 |
ataactttcactgcaacaggtct |
42744182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 147 - 269
Target Start/End: Complemental strand, 42753663 - 42753541
Alignment:
| Q |
147 |
acaggtgtttggccagaatccaagagttttagtgacgaaggatttggactgatcccaaaaaagtggcgtggaatctgtcaagttactaaaggaaatccag |
246 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||| ||| | || || |||||||||| ||||| |||||| ||||||||||||||| | |
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| T |
42753663 |
acaggtgtttggccagaatctaagagttttagtgatgaaggatatggtccaattcctaaaaagtggcatggaacttgtcaaactactaaaggaaatcccg |
42753564 |
T |
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| Q |
247 |
ataactttcactgcaataggtct |
269 |
Q |
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|
|||||||||||||||| |||||| |
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| T |
42753563 |
ataactttcactgcaacaggtct |
42753541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 317 - 402
Target Start/End: Original strand, 42734310 - 42734395
Alignment:
| Q |
317 |
aaactaatctttacaaattatgatggtaaacgtttaagcttcagaagatatacaagtttaaattgagcttagtatatcaccatgat |
402 |
Q |
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|||||||||||||||||||||||| ||||| ||||||| |||| | |||| |||||||||||||||||||||||||||||||||| |
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| T |
42734310 |
aaactaatctttacaaattatgatagtaaatgtttaagattcaccatatatgcaagtttaaattgagcttagtatatcaccatgat |
42734395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 267
Target Start/End: Complemental strand, 42717670 - 42717552
Alignment:
| Q |
149 |
aggtgtttggccagaatccaagagttttagtgacgaaggatttggactgatcccaaaaaagtggcgtggaatctgtcaagttactaaaggaaatccagat |
248 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| ||||| | |||| ||||||||||| |||| |||||| ||||||||| |||| ||||| |||| |
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| T |
42717670 |
aggtgtttggcctgaatccaagagtttcagtgatgaagggatgggaccaatcccaaaaaaatggcatggaatttgtcaagttgataaacaaaatcaagat |
42717571 |
T |
|
| Q |
249 |
aactttcactgcaataggt |
267 |
Q |
| |
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|| ||| |||||| |||| |
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| T |
42717570 |
aaatttttctgcaacaggt |
42717552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 147 - 272
Target Start/End: Original strand, 23039796 - 23039921
Alignment:
| Q |
147 |
acaggtgtttggccagaatccaagagttttagtgacgaaggatttggactgatcccaaaaaagtggcgtggaatctgtcaagttactaaaggaaatccag |
246 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| ||||||| ||| | ||||| |||||||||| ||||| |||||| | ||||||| ||||||| |
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| T |
23039796 |
acaggtgtttggccagaatctaagagttttaatgatgaaggatatggtccaatccctaaaaagtggcatggaacttgtcaaactgctaaagggaatccag |
23039895 |
T |
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| Q |
247 |
ataactttcactgcaataggtctttt |
272 |
Q |
| |
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|||||||||||||||| ||||||||| |
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| T |
23039896 |
ataactttcactgcaacaggtctttt |
23039921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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