View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18007_low_27 (Length: 412)

Name: NF18007_low_27
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18007_low_27
NF18007_low_27
[»] chr6 (17 HSPs)
chr6 (38-412)||(6724247-6724630)
chr6 (224-349)||(17533390-17533513)
chr6 (148-374)||(212003-212229)
chr6 (251-344)||(16109907-16110000)
chr6 (258-374)||(7495004-7495120)
chr6 (127-374)||(26545988-26546231)
chr6 (127-347)||(12311897-12312113)
chr6 (181-329)||(2988053-2988200)
chr6 (143-343)||(12283608-12283807)
chr6 (54-155)||(17533274-17533381)
chr6 (265-411)||(32340284-32340423)
chr6 (284-374)||(8485948-8486037)
chr6 (265-328)||(688087-688150)
chr6 (54-117)||(1929155-1929217)
chr6 (265-329)||(30928364-30928428)
chr6 (265-364)||(10229461-10229560)
chr6 (118-158)||(211943-211983)
[»] chr8 (23 HSPs)
chr8 (54-410)||(37231740-37232104)
chr8 (88-412)||(9136558-9136876)
chr8 (47-412)||(14180021-14180402)
chr8 (117-313)||(2813633-2813829)
chr8 (163-294)||(11558763-11558894)
chr8 (181-364)||(18928485-18928668)
chr8 (273-347)||(12006746-12006820)
chr8 (117-228)||(31431248-31431359)
chr8 (265-364)||(6166450-6166549)
chr8 (54-185)||(39297500-39297637)
chr8 (265-412)||(32855993-32856133)
chr8 (265-371)||(25430031-25430137)
chr8 (212-293)||(39297643-39297724)
chr8 (319-374)||(11558680-11558736)
chr8 (90-185)||(22470724-22470822)
chr8 (302-374)||(35536941-35537012)
chr8 (306-374)||(43101015-43101083)
chr8 (267-361)||(13003382-13003474)
chr8 (284-362)||(18320728-18320805)
chr8 (265-347)||(23877400-23877482)
chr8 (284-329)||(17748925-17748970)
chr8 (121-158)||(32579149-32579186)
chr8 (88-237)||(12006839-12006992)
[»] chr1 (26 HSPs)
chr1 (54-345)||(31183482-31183775)
chr1 (57-374)||(29488247-29488569)
chr1 (88-362)||(2136805-2137083)
chr1 (232-412)||(46594202-46594379)
chr1 (232-362)||(50709546-50709675)
chr1 (212-374)||(4073506-4073667)
chr1 (224-362)||(22791058-22791194)
chr1 (163-407)||(50461121-50461357)
chr1 (163-294)||(51273129-51273262)
chr1 (54-159)||(22790945-22791053)
chr1 (284-412)||(16122762-16122885)
chr1 (265-364)||(13558498-13558597)
chr1 (245-312)||(30193412-30193478)
chr1 (265-331)||(38682929-38682995)
chr1 (293-345)||(30902397-30902449)
chr1 (288-347)||(270965-271024)
chr1 (293-347)||(781883-781937)
chr1 (117-159)||(50709686-50709728)
chr1 (175-374)||(4966691-4966887)
chr1 (265-412)||(4973087-4973230)
chr1 (296-374)||(17936244-17936320)
chr1 (301-362)||(13643833-13643894)
chr1 (284-371)||(14287028-14287115)
chr1 (265-364)||(40693947-40694046)
chr1 (88-155)||(16123013-16123084)
chr1 (278-364)||(50726668-50726754)
[»] chr4 (21 HSPs)
chr4 (127-412)||(44746379-44746663)
chr4 (117-374)||(43770428-43770682)
chr4 (50-345)||(21619592-21619888)
chr4 (127-365)||(22198747-22198980)
chr4 (242-412)||(34075140-34075307)
chr4 (265-371)||(10037871-10037977)
chr4 (143-340)||(34733793-34733988)
chr4 (265-412)||(53586375-53586516)
chr4 (121-347)||(44987299-44987522)
chr4 (119-371)||(35823460-35823701)
chr4 (135-371)||(4775800-4776034)
chr4 (54-159)||(10632247-10632355)
chr4 (284-412)||(27675413-27675536)
chr4 (179-288)||(25204405-25204522)
chr4 (265-363)||(45774026-45774124)
chr4 (266-347)||(28102017-28102098)
chr4 (287-364)||(35103543-35103620)
chr4 (54-117)||(47724673-47724735)
chr4 (175-325)||(53018485-53018632)
chr4 (96-158)||(38947679-38947745)
chr4 (314-374)||(43770726-43770786)
[»] chr2 (29 HSPs)
chr2 (54-374)||(26352596-26352920)
chr2 (57-412)||(36925509-36925856)
chr2 (54-374)||(3353119-3353439)
chr2 (128-374)||(45388750-45388997)
chr2 (167-364)||(18858483-18858680)
chr2 (224-362)||(43355706-43355843)
chr2 (118-374)||(44986404-44986650)
chr2 (140-372)||(36525847-36526068)
chr2 (220-347)||(16496758-16496884)
chr2 (273-371)||(41323898-41323996)
chr2 (265-371)||(7017844-7017950)
chr2 (265-371)||(37272917-37273023)
chr2 (212-365)||(36467222-36467374)
chr2 (121-342)||(11457848-11458070)
chr2 (306-376)||(30776680-30776750)
chr2 (265-365)||(35298451-35298551)
chr2 (265-371)||(11562733-11562837)
chr2 (54-117)||(14749544-14749606)
chr2 (54-112)||(45389019-45389076)
chr2 (175-340)||(30485631-30485795)
chr2 (284-364)||(38221640-38221720)
chr2 (265-325)||(40498676-40498736)
chr2 (54-118)||(43344689-43344752)
chr2 (284-371)||(2788912-2788999)
chr2 (309-364)||(18561115-18561170)
chr2 (284-371)||(38558674-38558760)
chr2 (265-364)||(42794781-42794880)
chr2 (285-327)||(38140639-38140681)
chr2 (315-371)||(35428773-35428829)
[»] chr7 (23 HSPs)
chr7 (58-374)||(31396988-31397307)
chr7 (58-412)||(44797994-44798348)
chr7 (226-412)||(48138473-48138652)
chr7 (211-363)||(46192231-46192383)
chr7 (255-344)||(16817877-16817964)
chr7 (245-318)||(24699810-24699882)
chr7 (118-223)||(47277897-47278002)
chr7 (300-364)||(2483783-2483847)
chr7 (263-328)||(25482609-25482674)
chr7 (54-159)||(48138659-48138767)
chr7 (265-364)||(45648231-45648330)
chr7 (127-371)||(22201109-22201353)
chr7 (127-371)||(22236468-22236712)
chr7 (319-369)||(47277149-47277199)
chr7 (286-331)||(3094258-3094303)
chr7 (265-362)||(3751503-3751600)
chr7 (212-328)||(7857938-7858053)
chr7 (175-362)||(42040377-42040561)
chr7 (284-371)||(47843793-47843880)
chr7 (265-329)||(40836439-40836503)
chr7 (265-329)||(43495761-43495825)
chr7 (57-117)||(9229429-9229488)
chr7 (265-329)||(25311012-25311076)
[»] chr3 (30 HSPs)
chr3 (138-408)||(24611339-24611606)
chr3 (117-374)||(31489382-31489642)
chr3 (117-364)||(50387204-50387442)
chr3 (239-412)||(47014233-47014402)
chr3 (54-326)||(21842588-21842863)
chr3 (54-326)||(21858231-21858504)
chr3 (212-408)||(1341626-1341819)
chr3 (232-348)||(43471806-43471921)
chr3 (54-226)||(47014501-47014676)
chr3 (212-374)||(24121069-24121235)
chr3 (54-226)||(21853839-21854013)
chr3 (189-347)||(20619294-20619452)
chr3 (164-300)||(8913548-8913685)
chr3 (265-364)||(29324097-29324196)
chr3 (117-227)||(53530563-53530673)
chr3 (55-185)||(24121239-24121372)
chr3 (265-374)||(38489734-38489843)
chr3 (224-305)||(2111477-2111558)
chr3 (117-159)||(43471932-43471974)
chr3 (278-364)||(45472615-45472701)
chr3 (266-339)||(27164037-27164110)
chr3 (54-118)||(16343146-16343210)
chr3 (278-365)||(20369268-20369354)
chr3 (88-159)||(1341547-1341622)
chr3 (265-327)||(36504873-36504935)
chr3 (265-330)||(20179041-20179106)
chr3 (266-371)||(40614830-40614935)
chr3 (54-117)||(36172019-36172081)
chr3 (278-339)||(35296463-35296524)
chr3 (54-119)||(35433483-35433547)
[»] chr5 (24 HSPs)
chr5 (54-359)||(7732241-7732545)
chr5 (195-374)||(12118319-12118496)
chr5 (232-362)||(42990701-42990830)
chr5 (148-384)||(41634387-41634610)
chr5 (118-360)||(12848318-12848545)
chr5 (212-374)||(27971995-27972159)
chr5 (181-364)||(2627883-2628069)
chr5 (265-347)||(5836542-5836624)
chr5 (212-362)||(16756032-16756181)
chr5 (181-364)||(26564971-26565153)
chr5 (130-204)||(39329596-39329670)
chr5 (127-217)||(8802687-8802777)
chr5 (312-374)||(39329526-39329588)
chr5 (286-345)||(26016613-26016672)
chr5 (58-158)||(41634663-41634766)
chr5 (265-323)||(13407268-13407326)
chr5 (265-363)||(29231085-29231183)
chr5 (117-193)||(36906776-36906852)
chr5 (127-159)||(39700891-39700923)
chr5 (275-342)||(7612609-7612676)
chr5 (133-230)||(5836653-5836750)
chr5 (265-374)||(7057107-7057215)
chr5 (284-329)||(31114025-31114070)
chr5 (266-371)||(32076545-32076650)
[»] scaffold0001 (1 HSPs)
scaffold0001 (117-326)||(394216-394425)
[»] scaffold0051 (1 HSPs)
scaffold0051 (54-119)||(53789-53854)
[»] scaffold0565 (1 HSPs)
scaffold0565 (278-364)||(7919-8005)
[»] scaffold0495 (1 HSPs)
scaffold0495 (265-364)||(6176-6275)


Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 38 - 412
Target Start/End: Original strand, 6724247 - 6724630
Alignment:
Q  38 gcatcgatgaccctttaatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaaagttt---------ttata 128  Q
    |||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||   |         |||||    
T  6724247 gcatcgatgatcctttaatactatataatcataaaagccatcatttacagaaaaataatacatgcaatcaaaatataaaaaaaaataaaaaaaaattata 6724346  T
Q  129 taaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctc 228  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  6724347 taaattatattctattttcattcgtatgttatagtatcagcaaatgcatcaataaaagaactcaatacaaagtttgtttattatttattgattgaatctc 6724446  T
Q  229 ctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatct 328  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724447 ctatctctctttgctttcatccaccaaaaatataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatct 6724546  T
Q  329 ccattg-aattttcacaacacagcctcacttttttaccattcattttcttcttcttccaggatacgtctatgtgaagtatcttat 412  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||    
T  6724547 ccattgaaattttcacaacacagcctcacttttttaccattcatttt-ttttccttccaggatacgtctatgtgaagtatcttat 6724630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 224 - 349
Target Start/End: Original strand, 17533390 - 17533513
Alignment:
Q  224 atctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatata 323  Q
    ||||||| |||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||    
T  17533390 atctcctctctctcattactttcatccaccaaaaacataatttttaattggtt-atcgaaaaacaattacagtgattcatatcttaaatt-aatcatata 17533487  T
Q  324 catctccattgaattttcacaacaca 349  Q
    ||||||||||||||||||||||||||    
T  17533488 catctccattgaattttcacaacaca 17533513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 148 - 374
Target Start/End: Original strand, 212003 - 212229
Alignment:
Q  148 attcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttca 247  Q
    |||||| ||||| | ||||||||||  |||||||||||||||| || |||||||||||||| | |||||||||||||| |  | |||||  ||   ||||    
T  212003 attcatctgttagaatatcaacaaacacatcaataaaagaactaaaaacaaagtttgtttaatgttgattgattgaatatgttgtctctagttatcttca 212102  T
Q  248 tccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaaca 347  Q
    |||| | |||||||||||||||||| ||||||| ||||||||||||| | |||||||||||||||| |||  |||| ||||| ||| ||| ||||||  |    
T  212103 tccatcgaaaacataatttttaattagttaatctaaaaacaattatattaattcatatcttaaattaaattgtatagatctctattaaatcttcacagta 212202  T
Q  348 cagcctcacttttttaccattcatttt 374  Q
    |||  ||||||||||||| ||||||||    
T  212203 cagtttcacttttttacccttcatttt 212229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 251 - 344
Target Start/End: Complemental strand, 16110000 - 16109907
Alignment:
Q  251 accaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcaca 344  Q
    |||||||||||||||||||||||||||||| ||||| ||||| ||| |||||||||||| |||||||| |||||||||||||||||||||||||    
T  16110000 accaaaaacataatttttaattggttaatcaaaaaataattaaactaattcatatcttatattgaatcttatacatctccattgaattttcaca 16109907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 258 - 374
Target Start/End: Original strand, 7495004 - 7495120
Alignment:
Q  258 acataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcact 357  Q
    |||||||||||||| ||||||   ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||||     
T  7495004 acataatttttaataggttaaataaaaaacaattatagtgattcatatcttaaattgaatcatgtacatctccattgaattttcacaacacaatatcacc 7495103  T
Q  358 tttttaccattcatttt 374  Q
    |||| ||| ||||||||    
T  7495104 ttttcacccttcatttt 7495120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 127 - 374
Target Start/End: Original strand, 26545988 - 26546231
Alignment:
Q  127 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatc 226  Q
    ||||||||||||| | |||||| ||||||||||   |||||||| |  ||||| ||||||||||||| ||||| ||||||||  ||||||||||||||||    
T  26545988 tataaatcatattatgttttcaatcatatgttaggatatcaacagaaacatca-taaaagaactcaagacaaattttgtttaaaattgattgattgaatc 26546086  T
Q  227 tcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacat 326  Q
    |||  | |||| || | ||||| ||  ||| |||| | |||||| |  || || |||||||| | ||||| |||  ||||||| |||||| |||||||||    
T  26546087 tcc--tttctcattaccttcatgcataaaacacatga-ttttaagtattttattgaaaaacagtcatactaatttttatcttatattgaaccatatacat 26546183  T
Q  327 ctccattgaattttcacaacacagcctcacttttttaccattcatttt 374  Q
    ||  ||| ||| |||||||||    |||||||||||||| ||||||||    
T  26546184 ctttattaaatcttcacaacattatctcacttttttacccttcatttt 26546231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 347
Target Start/End: Original strand, 12311897 - 12312113
Alignment:
Q  127 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatc 226  Q
    ||||||||||||| ||||| ||||||||||||    |||||| | | ||||||  |||||||||||| ||||  |||||||| | |||||| |||||||     
T  12311897 tataaatcatattttatttccattcatatgttgggatatcaatagaagcatcatcaaaagaactcaacacaagttttgtttaatgttgattaattgaata 12311996  T
Q  227 tcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacat 326  Q
    |||| |||||| ||   |||||||||   ||  |||| ||| || ||||| ||||| |||||||| || |||| ||||||| |||||||||  |||||||    
T  12311997 tcctctctctcgttaacttcatccac---aactataa-tttaaagtggttgatcgagaaacaattctattgatgcatatctaaaattgaattgtatacat 12312092  T
Q  327 ctccattgaattttcacaaca 347  Q
     |||| | | |||||||||||    
T  12312093 ttccacttatttttcacaaca 12312113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 329
Target Start/End: Original strand, 2988053 - 2988200
Alignment:
Q  181 taaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatc 280  Q
    ||||||||||||| ||| |  || | || |||||||| | ||||||  || |||||| || | ||| ||||| ||||| |||||||| || ||||| |||    
T  2988053 taaaagaactcaacacatatattatctaatattgattaactgaatcagctctctctcgttaccttcttccacaaaaaatataatttt-aagtggttcatc 2988151  T
Q  281 gaaaaacaattatactgattcatatcttaaattgaatcatatacatctc 329  Q
    || |||||||| || |||| ||||||| |||||||||||||||||||||    
T  2988152 gagaaacaattttagtgatgcatatctaaaattgaatcatatacatctc 2988200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 343
Target Start/End: Original strand, 12283608 - 12283807
Alignment:
Q  143 ttttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgc 242  Q
    ||||||||||||||||    |||||| | | |||||| |||||||| |||| ||||| |||| ||| | |||||| |||||||||||| |||||| ||      
T  12283608 ttttcattcatatgttgggatatcaatagaagcatcattaaaagaattcaacacaaattttgattaatgttgattaattgaatctcctctctctcgttaa 12283707  T
Q  243 tttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttca 342  Q
     ||||||||| ||||  |||| ||| || ||||| ||| | |||||||| ||||||| ||||||| | | |||||  |||||||  ||| ||||||||||    
T  12283708 cttcatccacaaaaagtataa-tttaaagtggttcatccagaaacaattctactgatgcatatctaatactgaattgtatacattcccactgaattttca 12283806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 17533274 - 17533381
Alignment:
Q  54 aatactatataattataaaagtcatcatttac--agaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttc 147  Q
    ||||||||||| | ||||||||||  |||||   | |||||||||||||| |||||||||| ||||    |||||||  |||||||||||||||||||||    
T  17533274 aatactatatattcataaaagtcacaatttaataaaaaaaataatacatgtgatcaaaataaaaaatataaagttttcgtataaatcatattctattttc 17533373  T
Q  148 attcatat 155  Q
    ||||||||    
T  17533374 attcatat 17533381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 411
Target Start/End: Original strand, 32340284 - 32340423
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||| ||||| |||||||||||||| || |||| ||||| | ||||||||| ||||||||||  | |||||||| ||||||  | |||||||||||||    
T  32340284 ttttaaatggttcatcgaaaaacaattctattgatgcatatatgaaattgaattatatacatctttactgaatttt-acaacattgtctcacttttttac 32340382  T
Q  365 cattcattttcttcttcttccaggatacgtctatgtgaagtatctta 411  Q
    | ||||      |||| ||| ||||||| | ||||||||||||||||    
T  32340383 ccttca------tctttttctaggatacatatatgtgaagtatctta 32340423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 374
Target Start/End: Complemental strand, 8486037 - 8485948
Alignment:
Q  284 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcatttt 374  Q
    |||||||| ||||||| ||||||| |||||||||||||||||||| || |||| |||||||||||   |||| ||||||||| || |||||    
T  8486037 aaacaattctactgatgcatatctaaaattgaatcatatacatctacactgaa-tttcacaacactatctcaattttttaccctttatttt 8485948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 328
Target Start/End: Original strand, 688087 - 688150
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatct 328  Q
    |||||| ||||| ||||| ||||||||||| |||| ||||||| ||||||||| ||||||||||    
T  688087 ttttaagtggttcatcgagaaacaattatattgatgcatatctaaaattgaataatatacatct 688150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 1929217 - 1929155
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa 117  Q
    |||||||||||||||||||||||   ||||||| ||||||||||||||  ||||||||||||||    
T  1929217 aatactatataattataaaagtcgcaatttaca-aaaaataatacatgtaatcaaaatataaaa 1929155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 329
Target Start/End: Complemental strand, 30928428 - 30928364
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctc 329  Q
    |||||| ||||| ||| | |||||||||||||| | ||||| | |||||||||||||||||||||    
T  30928428 ttttaagtggttcatcaagaaacaattatactggtgcatatataaaattgaatcatatacatctc 30928364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 364
Target Start/End: Complemental strand, 10229560 - 10229461
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||| ||||| ||| |||||||||| || | || |||||||  |||||||||||||||||||| || |||| ||  |||||  | |||||||||||||    
T  10229560 ttttaagtggttcatcaaaaaacaattctagttatgcatatctataattgaatcatatacatctctatcgaatgtttgcaacattgtctcacttttttac 10229461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 211943 - 211983
Alignment:
Q  118 aagtttttatataaatcatattctattttcattcatatgtt 158  Q
    |||||||  ||||||||||||| ||||||||||||||||||    
T  211943 aagttttcgtataaatcatattttattttcattcatatgtt 211983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 173; Significance: 7e-93; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 54 - 410
Target Start/End: Complemental strand, 37232104 - 37231740
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 149  Q
    ||||||||||||  ||||||||||  ||||||| |||||||||| ||| ||||||| || ||||    || ||||  |||||||||||||||||||||||    
T  37232104 aatactatataagcataaaagtcacaatttaca-aaaaataatatatgtgatcaaagtaaaaaatgtaaatttttcgtataaatcatattctattttcat 37232006  T
Q  150 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatc 249  Q
    | ||||||||   ||||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||| ||| |||| |||||| || ||||||||    
T  37232005 ttatatgttaggatatcaacaaatgcatcaataaaagaactcaaaacaaagtttgtttaatgttgattaatttaatttcctttctctcgttactttcatc 37231906  T
Q  250 caccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacaca 349  Q
     |||||||||||||||||||||||||||||||||||| | |||   ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37231905 aaccaaaaacataatttttaattggttaatcgaaaaatatttactgtgattcatatcttaaattgaatcgtatacatctccattgaattttcacaacaca 37231806  T
Q  350 gcctcacttttttaccattcattttcttcttcttc-----caggatacgtctatgtgaagtatctt 410  Q
      |||||||||||||| |||||||| |||||||||     |||||||||||| | |||||||||||    
T  37231805 atctcacttttttacccttcatttttttcttcttcttcttcaggatacgtctctatgaagtatctt 37231740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 88 - 412
Target Start/End: Original strand, 9136558 - 9136876
Alignment:
Q  88 aaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataa 183  Q
    ||||| |||||||| |||||||||| ||||    || ||||  ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  9136558 aaaaaaaatacatgtgatcaaaataaaaaatgtaaaattttcgtataaatcatattctattttcattcatatgttatgatatcaacaaatgcatcaataa 9136657  T
Q  184 aagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaa 283  Q
     |||| |||| | ||| ||| |||| | || ||| |||||||||| | |||||| || ||||||||||| |||  ||||||||| |||||||||||||||    
T  9136658 gagaattcaaaataaaatttatttattgttaatttattgaatctcatctctctcgttactttcatccactaaa--cataatttt-aattggttaatcgaa 9136754  T
Q  284 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcattttcttcttctt 383  Q
    ||||||||||| |||||| ||| |||||||||||||||||  ||||||||||||||||||||||||  |||||||||||||| ||||||||       ||    
T  9136755 aaacaattatagtgattcttattttaaattgaatcatatatgtctccattgaattttcacaacacaatctcacttttttacccttcatttt-------tt 9136847  T
Q  384 ccaggatacgtctatgtgaagtatcttat 412  Q
    ||||||||||||| |||||||||| ||||    
T  9136848 ccaggatacgtctctgtgaagtatgttat 9136876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 47 - 412
Target Start/End: Complemental strand, 14180402 - 14180021
Alignment:
Q  47 accctttaatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattcta 142  Q
    |||||| |||||||| |||| ||||||||||  ||||||| ||||||||| |||| |||||||||| || |    || ||||  ||||||||||||||||    
T  14180402 acccttcaatactatttaatcataaaagtcacaatttaca-aaaaataatgcatgtgatcaaaataaaatatgtaaatttttcgtataaatcatattcta 14180304  T
Q  143 ttttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgc 242  Q
    |||||||||||| ||||   ||||||||||||||||||||||||||||||  |||||||||||||| | |||||||||||||| || | |||||| || |    
T  14180303 ttttcattcataagttaggatatcaacaaatgcatcaataaaagaactca--acaaagtttgtttaatgttgattgattgaatttcatctctctcgttac 14180206  T
Q  243 tt----------------------tcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcat 320  Q
    ||                      |||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  14180205 tttcatccaccaaaaacgttactttcatccaccaaaaacataatttttaattggttaatcgaaaaa-aattatagtgatacatatcttaaattgaatcat 14180107  T
Q  321 atacatctccattgaattttcacaacacagcctcacttttttaccattcattttcttcttcttccaggatacgtctatgtgaagtatcttat 412  Q
    |||||||||||||||||||||| ||||||  |||||||||||||| ||||||      || ||||| ||||||||| |||||||||||||||    
T  14180106 atacatctccattgaattttcaaaacacattctcacttttttacccttcatt------tttttccaagatacgtctctgtgaagtatcttat 14180021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 117 - 313
Target Start/End: Original strand, 2813633 - 2813829
Alignment:
Q  117 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 216  Q
    ||||||||| |||||||||||||||||||||||||||||||||   |||||||||||  |||||||||||||||||| |||||||||||||| | |||||    
T  2813633 aaagtttttgtataaatcatattctattttcattcatatgttaggatatcaacaaatatatcaataaaagaactcaaaacaaagtttgtttaatgttgat 2813732  T
Q  217 tgattgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaatt 313  Q
    ||||| |||||||  |||||| || ||||||||||||||||  ||||| ||||||| ||||||||||||| ||||||| |||||| |||||||||||    
T  2813733 tgattaaatctcccctctctcgttactttcatccaccaaaattataatatttaatttgttaatcgaaaaataattatagtgattcgtatcttaaatt 2813829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 163 - 294
Target Start/End: Complemental strand, 11558894 - 11558763
Alignment:
Q  163 tatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatccaccaaaaacata 262  Q
    |||||||||||||| ||||||||||| |||| ||||| |||||||| | |||||| |||||||||| || ||||  || ||||||||||||||||| |||    
T  11558894 tatcaacaaatgcaacaataaaagaaatcaaaacaaaatttgtttaatgttgattaattgaatctcataactcttcttactttcatccaccaaaaatata 11558795  T
Q  263 atttttaattggttaatcgaaaaacaattata 294  Q
     ||||||||| ||||||||||||  |||||||    
T  11558794 ttttttaattagttaatcgaaaattaattata 11558763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 181 - 364
Target Start/End: Original strand, 18928485 - 18928668
Alignment:
Q  181 taaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatcc-accaaaaacataatttttaattggttaat 279  Q
    ||||||||||||| ||||| ||| |||| |||||||| | |||||| | | |||||| ||   ||||||| || ||||| |||||||| || ||||| ||    
T  18928485 taaaagaactcaacacaaattttatttaatattgattaactgaatcacatctctctcgttatcttcatcccacaaaaaatataatttt-aagtggttcat 18928583  T
Q  280 cgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    ||| |||||||| ||||||| ||||||| ||||||||||||||||||||| ||| |||||| ||||||  | |||| ||||||||    
T  18928584 cgagaaacaattctactgatgcatatctaaaattgaatcatatacatctcaattcaatttttacaacattgtctcaattttttac 18928668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 347
Target Start/End: Complemental strand, 12006820 - 12006746
Alignment:
Q  273 ggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaaca 347  Q
    |||| ||| |||||||||| || |||| ||||||| ||||||||||||||||||||||| |||||||||||||||    
T  12006820 ggttcatcaaaaaacaattctagtgatgcatatctaaaattgaatcatatacatctccactgaattttcacaaca 12006746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 31431248 - 31431359
Alignment:
Q  117 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 216  Q
    |||||||| |||||||||||||| |||||||||||||||||||   |||| ||| |  ||||| ||||||||||||| ||||| ||||| || | |||||    
T  31431248 aaagttttcatataaatcatattatattttcattcatatgttaagatatccacagaaacatcattaaaagaactcaacacaaattttgtctaatcttgat 31431347  T
Q  217 tgattgaatctc 228  Q
    |  |||||||||    
T  31431348 tatttgaatctc 31431359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 364
Target Start/End: Complemental strand, 6166549 - 6166450
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||| || || ||||| || ||||||||||||| ||||||| |||||||||||||||||| |  | |||||||| ||||||  | |||||||||||||    
T  6166549 ttttaagtgtttcatcgagaatcaattatactgatgcatatctaaaattgaatcatatacatttataatgaatttttacaacattgtctcacttttttac 6166450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 39297500 - 39297637
Alignment:
Q  54 aatactatataattataaaagtcatcatttacag--aaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttc 147  Q
    ||||||||||||| ||||||||||  |||||||   |||||||||||||  |||||||||| ||||    |||||||| || | || ||||| |||||||    
T  39297500 aatactatataatcataaaagtcacaatttacaacaaaaaataatacatatgatcaaaataaaaaatttaaagtttttgtaaacattatattttattttc 39297599  T
Q  148 attcatatgttatagtatcaacaaatgcatcaataaaa 185  Q
    ||| |||| |||   |||||||||||| ||||||||||    
T  39297600 atttatatattaggatatcaacaaatgtatcaataaaa 39297637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 412
Target Start/End: Complemental strand, 32856133 - 32855993
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||| ||||| ||||| |||||||| || |||| ||||||| ||||||||||||||||||||| | ||||| || ||||||  | ||| |||||||||    
T  32856133 ttttaagtggttcatcgagaaacaattctagtgat-catatctaaaattgaatcatatacatctctactgaatgtttacaacattgtctcgcttttttac 32856035  T
Q  365 cattcattttcttcttcttccaggatacgtctatgtgaagtatcttat 412  Q
          | ||| |||| ||| ||||||||| | |||||||||||||||    
T  32856034 ------tcttcatctttttctaggatacgtatctgtgaagtatcttat 32855993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 371
Target Start/End: Complemental strand, 25430137 - 25430031
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||| ||||| ||||  |||||||| |||| || ||||||| ||||||||||||||| ||||    |||||||| ||||||  | |||||||||||||    
T  25430137 ttttaagtggttcatcgtgaaacaattctactaatgcatatctaaaattgaatcatatatatctgtcatgaatttttacaacattgtctcacttttttac 25430038  T
Q  365 cattcat 371  Q
    | |||||    
T  25430037 ccttcat 25430031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 293
Target Start/End: Original strand, 39297643 - 39297724
Alignment:
Q  212 ttgattgattgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattat 293  Q
    ||||||||||||||||  | |||||| ||   ||||||||| | ||||||||||||||||||| | ||||||||| ||||||    
T  39297643 ttgattgattgaatcttgtctctctcattatcttcatccacaataaacataatttttaattggctcatcgaaaaataattat 39297724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 374
Target Start/End: Complemental strand, 11558736 - 11558680
Alignment:
Q  319 atatacatctccattgaatttt-cacaacacagcctcacttttttaccattcatttt 374  Q
    |||||||||||||||||||||| |||||||||  |||| ||||||||| ||||||||    
T  11558736 atatacatctccattgaatttttcacaacacaatctcatttttttacccttcatttt 11558680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 185
Target Start/End: Complemental strand, 22470822 - 22470724
Alignment:
Q  90 aaataatacatgcgatcaaaatataaa---aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaa 185  Q
    |||||||||||| |||||||||| |||   ||||||||  ||||||||||||||||| ||||||  |||||||   ||||||||||  ||||| |||||    
T  22470822 aaataatacatgtgatcaaaataaaaatataaagttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaaa 22470724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 35537012 - 35536941
Alignment:
Q  302 atatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcatttt 374  Q
    |||||| |||||||||| |||||| ||||||||| |||||| ||   || |||||||||||||||||||||||    
T  35537012 atatctcaaattgaatcttatacacctccattga-ttttcataattgagtctcacttttttaccattcatttt 35536941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 374
Target Start/End: Complemental strand, 43101083 - 43101015
Alignment:
Q  306 cttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcatttt 374  Q
    ||||| |||||| |||| ||||||||||||||||| ||||||  | || ||||||||||| ||||||||    
T  43101083 cttaagttgaataatatgcatctccattgaattttaacaacatcgtctaacttttttacccttcatttt 43101015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 361
Target Start/End: Complemental strand, 13003474 - 13003382
Alignment:
Q  267 ttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttt 361  Q
    ||||||| || ||||| |||||||| || | || ||||||| ||||||||||||||||||||  |||||||||  ||||||  | ||||||||||    
T  13003474 ttaattgattcatcgagaaacaattctagttatgcatatctaaaattgaatcatatacatct--attgaatttctacaacattgtctcacttttt 13003382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 18320805 - 18320728
Alignment:
Q  284 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcactttttt 362  Q
    ||||| || |||| || ||||||| ||||||||||||||||||||||| | || ||||||||||  | |||||||||||    
T  18320805 aaacatttctacttatgcatatctaaaattgaatcatatacatctccact-aaatttcacaacattgtctcactttttt 18320728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 347
Target Start/End: Original strand, 23877400 - 23877482
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaaca 347  Q
    |||||| ||||| |||| ||||||||| || | || ||||||| ||||||||||||||| ||||| | ||||| || ||||||    
T  23877400 ttttaagtggttcatcggaaaacaattctagtcatgcatatctaaaattgaatcatatatatctctactgaatgtttacaaca 23877482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 329
Target Start/End: Original strand, 17748925 - 17748970
Alignment:
Q  284 aaacaattatactgattcatatcttaaattgaatcatatacatctc 329  Q
    |||||||| || |||| |||||| ||||||||||||||||||||||    
T  17748925 aaacaattctagtgatgcatatcataaattgaatcatatacatctc 17748970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 32579186 - 32579149
Alignment:
Q  121 tttttatataaatcatattctattttcattcatatgtt 158  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  32579186 tttttttataaatcatattctattttctttcatatgtt 32579149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 237
Target Start/End: Complemental strand, 12006992 - 12006839
Alignment:
Q  88 aaaaataatacatgcgatcaaaatataaa----aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataa 183  Q
    |||||||||||||| |||||||||| |||    ||||||||  ||||||  ||||| |||||| |||||||||||    |||||| ||| |||| | |||    
T  12006992 aaaaataatacatgtgatcaaaataaaaaatgtaaagttttcttataaactatattatatttttattcatatgttgggatatcaagaaaagcataattaa 12006893  T
Q  184 aagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctc 237  Q
    |||||||| | ||||| |||||  | | ||||||  |||||||| || ||||||    
T  12006892 aagaactctacacaaattttgtccaatgttgattagttgaatcttctctctctc 12006839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 54 - 345
Target Start/End: Complemental strand, 31183775 - 31183482
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 149  Q
    ||||||||||||| |||||||||| |||||||| ||||||||||||||  ||||||||| ||||    ||||||| |||||||||||||||||||||| |    
T  31183775 aatactatataatcataaaagtcaccatttaca-aaaaataatacatgtaatcaaaataaaaaatgtaaagttttcatataaatcatattctattttctt 31183677  T
Q  150 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatc 249  Q
    ||||||||||   |||||||||||| ||||||| |||||||||| |||||||||||||| |||||||||||||||| |||| |||||  || |||||||     
T  31183676 tcatatgttaggatatcaacaaatgtatcaatagaagaactcaaaacaaagtttgtttaatattgattgattgaatttcctctctcttgttactttcat- 31183578  T
Q  250 caccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaa 345  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||| |||||||| ||||||||||||||||||    
T  31183577 caccaaaaacataatttttaattggttaatcgaaaagcaattatagtgattcatatctcaaattgaattatatacatatccattgaattttcacaa 31183482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 57 - 374
Target Start/End: Complemental strand, 29488569 - 29488247
Alignment:
Q  57 actatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattca 152  Q
    |||||| ||| ||||||||||  ||||| | ||||||||| |||| |||||||||| ||||    |||||||  ||||||||||||| ||||||||||||    
T  29488569 actataaaatgataaaagtcacgatttaga-aaaaataatgcatgtgatcaaaataaaaaatataaagttttcgtataaatcatattttattttcattca 29488471  T
Q  153 tatgttatagtatcaacaaatgcatcaat--aaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatcc 250  Q
    |||||||   |||||||||||||||||||  |||||||||||| |||||||||||||| | ||||||||||||||||||  || ||| || |||||||||    
T  29488470 tatgttaagatatcaacaaatgcatcaattaaaaagaactcaaaacaaagtttgtttaatgttgattgattgaatctccactcactcgttactttcatcc 29488371  T
Q  251 accaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacag 350  Q
     | ||||||||||||||||||||||||||| ||| ||||||| | |||| ||||||||||| | ||||||||||||||||| | ||||||||||||| ||    
T  29488370 tctaaaaacataatttttaattggttaatcaaaatacaattacaatgatacatatcttaaacttaatcatatacatctccactaaattttcacaacaaag 29488271  T
Q  351 cctcacttttttaccattcatttt 374  Q
     ||||||||||  || ||||||||    
T  29488270 tctcactttttcccccttcatttt 29488247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 88 - 362
Target Start/End: Complemental strand, 2137083 - 2136805
Alignment:
Q  88 aaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataa 183  Q
    |||||||||||||| |||||||| | ||||    |||||||  || ||||||||||||||||||||||||||||||   ||||||||||||||| |||||    
T  2137083 aaaaataatacatgtgatcaaaacaaaaaatctaaagttttcgtagaaatcatattctattttcattcatatgttaggatatcaacaaatgcattaataa 2136984  T
Q  184 aagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaa 283  Q
    ||||| |||| ||||||||| |||| | |||||||||||||| ||   | | || || ||||| || | ||||||||||||||||||||||||||||| |    
T  2136983 aagaattcaaaacaaagtttatttaatgttgattgattgaatatctcctatttcgttactttcgtcaatcaaaaacataatttttaattggttaatcgta 2136884  T
Q  284 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcactttttt 362  Q
    |||||||| |  |||||||||| ||||||||||| ||||| |  ||||||||||||||||||||||  |||||||||||    
T  2136883 aaacaattgtggtgattcatatattaaattgaattatatatacttccattgaattttcacaacacatactcactttttt 2136805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 232 - 412
Target Start/End: Original strand, 46594202 - 46594379
Alignment:
Q  232 tctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctcca 331  Q
    |||||| || |||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46594202 tctctcgttactttcatccaccaaaaacataatttttaattggtca-tcgaaaaacaattatagtgattcatatcttaaattgaatcatatacatctcca 46594300  T
Q  332 ttgaattttcacaacacagcctcacttttttaccattcattttcttcttcttccaggatacgtctatgtgaagtatcttat 412  Q
    |||||||||||||||| || |||| |||||||   |||||||| || ||||| ||||||| |||| |||||||||||||||    
T  46594301 ttgaattttcacaacatagtctcatttttttatacttcatttt-tttttctt-caggatatgtctctgtgaagtatcttat 46594379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 232 - 362
Target Start/End: Complemental strand, 50709675 - 50709546
Alignment:
Q  232 tctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctcca 331  Q
    |||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  50709675 tctctcgttactttcatccaccaaaaacataatttttaattggtta-tcgaaaaacaattataatgattcatatcttaaattgaatcatatacatctcca 50709577  T
Q  332 ttgaattttcacaacacagcctcactttttt 362  Q
    ||||||||||||||||| | |||| ||||||    
T  50709576 ttgaattttcacaacactgtctcattttttt 50709546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 212 - 374
Target Start/End: Original strand, 4073506 - 4073667
Alignment:
Q  212 ttgattgattgaatctcctatctctctttgctttcatccaccaaaaacataatttt-taattggttaatcgaaaaacaattatactgattcatatcttaa 310  Q
    ||||||||||||||||||  ||||||  | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  4073506 ttgattgattgaatctccc-tctctcgctactttcatccaccaaaaacataattttttaattggttaatcgaaaaacaattatagtgattcatatcttaa 4073604  T
Q  311 attgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcatttt 374  Q
    ||||||||||| ||||| ||||||||||||||||| |||   |||| |||||||| ||||||||    
T  4073605 attgaatcatacacatcgccattgaattttcacaaaacaatttcac-tttttacctttcatttt 4073667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 224 - 362
Target Start/End: Original strand, 22791058 - 22791194
Alignment:
Q  224 atctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatata 323  Q
    ||||||| |||||| || |||||||||||||||||||||||||||||||||||| ||||||| ||||| || ||||||||||||||||||||||||||||    
T  22791058 atctcctctctctcgttactttcatccaccaaaaacataatttttaattggtta-tcgaaaa-caattgtagtgattcatatcttaaattgaatcatata 22791155  T
Q  324 catctccattgaattttcacaacacagcctcactttttt 362  Q
    ||| ||||||||||||||||||||||| |||| ||||||    
T  22791156 catatccattgaattttcacaacacagtctcattttttt 22791194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 163 - 407
Target Start/End: Original strand, 50461121 - 50461357
Alignment:
Q  163 tatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatccaccaaaaacata 262  Q
    ||||||||||||||||||||||||||||||| |||||        | | || ||||||||||| | ||  || || || ||||||||||| |||||||||    
T  50461121 tatcaacaaatgcatcaataaaagaactcaaaacaaaaa------aatgttaattgattgaattttct--ctttcgttactttcatccacaaaaaacata 50461212  T
Q  263 atttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcactttttt 362  Q
    ||||||| ||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||| ||||||||||||| | | |  ||||||| |||    
T  50461213 atttttatttggttaatcgaaaaacaattatatcgattcatatcttaaattgaaccatatacatctctattgaattttcaccatataatctcacttcttt 50461312  T
Q  363 accattcattttcttcttcttccaggatacgtctatgtgaagtat 407  Q
    ||| |||||||| || || ||  ||||||||| |  |||||||||    
T  50461313 acccttcatttttttttttttttaggatacgtatgcgtgaagtat 50461357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 163 - 294
Target Start/End: Complemental strand, 51273262 - 51273129
Alignment:
Q  163 tatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctct--ttgctttcatccaccaaaaaca 260  Q
    ||||||||| ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| |||||||  ||||||||||| | ||||||||    
T  51273262 tatcaacaactgcatcaataaaagaactcaaaacaaaatttgtttaatattgattgattgaatctcctctctctctcattgctttcatctatcaaaaaca 51273163  T
Q  261 taatttttaattggttaatcgaaaaacaattata 294  Q
    |||||||||||| || |||||||||| |||||||    
T  51273162 taatttttaattagtcaatcgaaaaataattata 51273129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 22790945 - 22791053
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 149  Q
    ||||||||||||| ||||||||||  ||||||| |||||||||||||| |||||||||| ||||    |||||||  ||||||||||||| |||||||||    
T  22790945 aatactatataatcataaaagtcacaatttaca-aaaaataatacatgtgatcaaaataaaaaacttaaagttttcgtataaatcatattttattttcat 22791043  T
Q  150 tcatatgtta 159  Q
    ||||||||||    
T  22791044 tcatatgtta 22791053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 284 - 412
Target Start/End: Complemental strand, 16122885 - 16122762
Alignment:
Q  284 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcattttcttcttctt 383  Q
    |||||||||||||||| ||||||| |||||||||||||||||| |||| |||| ||||||||||  | |||||||||||||| ||||||||    || |     
T  16122885 aaacaattatactgatgcatatctaaaattgaatcatatacatttccaatgaa-tttcacaacattgtctcacttttttacccttcatttt----ttgtc 16122791  T
Q  384 ccaggatacgtctatgtgaagtatcttat 412  Q
    | | ||||||| |||||||||||||||||    
T  16122790 ctatgatacgtatatgtgaagtatcttat 16122762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 265 - 364
Target Start/End: Complemental strand, 13558597 - 13558498
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||| ||||| ||||| |||||||| || |||| ||||||| ||||||||||||||||||| | ||||||| || ||||||  | |||||||||||||    
T  13558597 ttttaagtggttcatcgagaaacaattttagtgatgcatatctaaaattgaatcatatacatccctattgaatgtttacaacattgtctcacttttttac 13558498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 30193478 - 30193412
Alignment:
Q  245 tcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaat 312  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||  |||||| || ||||||    
T  30193478 tcatccaccaaaaacataatttttaattggtt-atcgaaaaacaattatagcgattcaaattttaaat 30193412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 331
Target Start/End: Original strand, 38682929 - 38682995
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctcca 331  Q
    |||||| ||||||||||| |||||||| || |||| ||||||| |||||||||||||||||||||||    
T  38682929 ttttaagtggttaatcgagaaacaattctattgatgcatatctaaaattgaatcatatacatctcca 38682995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 30902397 - 30902449
Alignment:
Q  293 tactgattcatatcttaaattgaatcatatacatctccattgaattttcacaa 345  Q
    ||||||| ||||| | |||||||||||||||||||||||||||||||||||||    
T  30902397 tactgatgcatatttaaaattgaatcatatacatctccattgaattttcacaa 30902449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 347
Target Start/End: Complemental strand, 271024 - 270965
Alignment:
Q  288 aattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaaca 347  Q
    ||||||||||||  |||||| ||||||||||||||| |||||||| ||||||||||||||    
T  271024 aattatactgatgtatatctaaaattgaatcatatatatctccatcgaattttcacaaca 270965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 347
Target Start/End: Complemental strand, 781937 - 781883
Alignment:
Q  293 tactgattcatatcttaaattgaatcatatacatctccattgaattttcacaaca 347  Q
    ||||| ||||||||| |||||||||||||||||| | ||||||||||||||||||    
T  781937 tactgtttcatatctaaaattgaatcatatacatattcattgaattttcacaaca 781883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 50709728 - 50709686
Alignment:
Q  117 aaagtttttatataaatcatattctattttcattcatatgtta 159  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  50709728 aaagttttcatataaatcatattctattttcattcatatgtta 50709686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 374
Target Start/End: Complemental strand, 4966887 - 4966691
Alignment:
Q  175 catcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattgg 274  Q
    ||||| ||||||||||||| ||||| ||| |||| | |||||| | ||||||  || |||||| || ||||||||||| | ||  |||  |||||| | |    
T  4966887 catcattaaaagaactcaacacaaattttatttaatgttgattaactgaatcatctctctctcgttactttcatccacaagaagtata--ttttaagttg 4966790  T
Q  275 ttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcatttt 374  Q
    || ||||| |||||||| ||| |||  |||||| ||||||||||||||| ||||  | |||||||| |||| |  | |||||||| ||||| ||||||||    
T  4966789 ttcatcgagaaacaattctacagatgtatatctaaaattgaatcatatatatctatagtgaatttt-acaatattgtctcactttattacccttcatttt 4966691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 412
Target Start/End: Original strand, 4973087 - 4973230
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||| | ||| ||||| |||||||| ||| |||  |||||| ||||||||||||||| ||||||| |||||||| |||| |  | |||||||| || |    
T  4973087 ttttaagttgttcatcgagaaacaattctacagatgtatatctaaaattgaatcatatatatctccactgaatttttacaatattgtctcactttattgc 4973186  T
Q  365 cattcattttcttcttcttccaggatacgtctatgtgaagtatcttat 412  Q
    | ||||||||    || ||| ||||||| | ||||| |||||||||||    
T  4973187 ccttcatttt----tttttctaggatacatatatgtaaagtatcttat 4973230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 17936244 - 17936320
Alignment:
Q  296 tgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcatttt 374  Q
    ||||||||||| || ||||| ||||||||||||||||||||||||||||| |||  |||| ||||||||  ||||||||    
T  17936244 tgattcatatcatatattga-tcatatacatctccattgaattttcacaaaacaatctca-ttttttacacttcatttt 17936320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 13643894 - 13643833
Alignment:
Q  301 catatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcactttttt 362  Q
    ||||||| ||||||||||||||||||||| |||||||||| |||||   | |||||||||||    
T  13643894 catatctaaaattgaatcatatacatctctattgaatttttacaacgttgtctcactttttt 13643833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 371
Target Start/End: Complemental strand, 14287115 - 14287028
Alignment:
Q  284 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcat 371  Q
    |||||||| |||| || ||||||| |||||| ||||||||||||||   |||||||| ||||||  | ||||||||||| || |||||    
T  14287115 aaacaattctactaatgcatatctaaaattgcatcatatacatctctcctgaatttttacaacattgtctcactttttttcccttcat 14287028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 364
Target Start/End: Complemental strand, 40694046 - 40693947
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||| || || |||||||||||||| || |||| ||||||| | ||||| |||||||||||   | |||||||| ||||||  | |||||||||||||    
T  40694046 ttttaagtgtttcatcgaaaaacaattctattgatgcatatctaatattgagtcatatacatcaataatgaatttttacaacattgtctcacttttttac 40693947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 16123084 - 16123013
Alignment:
Q  88 aaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcatat 155  Q
    ||||||||||||| ||||||||||| ||||    |||||||  |||||| |||||| |||||||||||||||    
T  16123084 aaaaataatacattcgatcaaaataaaaaatgtaaagttttcttataaaccatattatattttcattcatat 16123013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 50726754 - 50726668
Alignment:
Q  278 atcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    ||||| |||||||| || |||  ||||||| ||||||| ||||||||||||  | |||||||| ||||||  | |||||||||||||    
T  50726754 atcgagaaacaattctattgacgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgtctcacttttttac 50726668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 127 - 412
Target Start/End: Complemental strand, 44746663 - 44746379
Alignment:
Q  127 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatc 226  Q
    ||||||||||||| ||||||||||||||| |||   ||||||||||||||||||||||| ||||||| |||||||||||||| | ||| |||||||||||    
T  44746663 tataaatcatattttattttcattcatatcttaggatatcaacaaatgcatcaataaaaaaactcaaaacaaagtttgtttaatgttggttgattgaatc 44746564  T
Q  227 tcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacat 326  Q
    |||| |||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||    
T  44746563 tcctctctctcgttactttcatccaccaaaaacataatttataattggttaatcgaaaaacaattatagtaatttatatcttaaattgaatcatatacat 44746464  T
Q  327 ctccattgaattttcacaacacagcctcacttttttaccattcattttcttcttcttccaggatacgtctatgtgaagtatcttat 412  Q
    ||| ||||||||||||||||| || |||| |||| |||| || | ||||||||| ||| | ||||||| | |||||||||||||||    
T  44746463 ctcaattgaattttcacaacaaagtctcatttttataccctt-aatttcttctttttcaatgatacgtatctgtgaagtatcttat 44746379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 117 - 374
Target Start/End: Original strand, 43770428 - 43770682
Alignment:
Q  117 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 216  Q
    ||||||||  |||||||||||||||||| |  |||||| ||||   ||||||||||| ||| ||||||| ||||||| |||| ||||||||| | |||||    
T  43770428 aaagttttcgtataaatcatattctattatatttcatacgttaggatatcaacaaattcattaataaaataactcaaaacaa-gtttgtttaatgttgat 43770526  T
Q  217 tgattgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaa 316  Q
    ||||||||||| ||  ||||| |||||| |||||| |||||||| ||||||||| ||||||||||||| |||||| || |||||||||||||||||||||    
T  43770527 tgattgaatcttct--ctctcgttgcttacatccaacaaaaacacaatttttaactggttaatcgaaagacaattgtagtgattcatatcttaaattgaa 43770624  T
Q  317 tcatatacatctccattgaattttcacaacacagcctcacttttttaccattcatttt 374  Q
    |||||||||||| ||||||||||||||||||||| ||||| |||||||| || |||||    
T  43770625 tcatatacatcttcattgaattttcacaacacagtctcacatttttaccctttatttt 43770682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 50 - 345
Target Start/End: Complemental strand, 21619888 - 21619592
Alignment:
Q  50 ctttaatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa---aagtttttatataaatcatattctatttt 146  Q
    ||||| ||||||| ||| ||||||||||  ||  ||| |||||||||||||| |||||||||||||||   ||  ||||   |||| || ||||||||||    
T  21619888 ctttattactatacaatcataaaagtcacaatcgacaaaaaaataatacatgtgatcaaaatataaaatataaaattttcg-taaaacacattctatttt 21619790  T
Q  147 cattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttc 246  Q
     ||||||||||||   ||| ||||  ||||||||||||| |||||||   |||||||||||| | |||||||||||||| | ||  ||||| || | |||    
T  21619789 tattcatatgttaggatattaacacgtgcatcaataaaataactcaaataaaagtttgtttaatgttgattgattgaattttct--ctctcattaccttc 21619692  T
Q  247 atccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatctt-aaattgaatcatatacatctccattgaattttcacaa 345  Q
    |||||| ||||| ||||||||| |||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  21619691 atccacaaaaaaaataatttttcattgattaatcgaaaaacaattatactcattcatatcttaaaattgaatcatatacatcttcattgaattttcacaa 21619592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 127 - 365
Target Start/End: Original strand, 22198747 - 22198980
Alignment:
Q  127 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatc 226  Q
    ||||||||||||  |||||||||| ||||||||   ||||||||||||  | ||    ||||||||| |||||||||||||| | |||||||| ||||||    
T  22198747 tataaatcatatcgtattttcatttatatgttaggatatcaacaaatgtgttaa----agaactcaaaacaaagtttgtttaatgttgattgactgaatc 22198842  T
Q  227 tcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacat 326  Q
    ||||   |||| || ||||  ||||||||||| || |||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||    
T  22198843 tcctga-tctcattacttttgtccaccaaaaatatgatttttaattggttaatcgaaaaacaattatagtgattcgtgtcttaaattgaatcatatacat 22198941  T
Q  327 ctccattgaattttcacaacacagcctcacttttttacc 365  Q
    || |||| |||||| |||||||| |||||||||||||||    
T  22198942 cttcatttaatttttacaacacaacctcacttttttacc 22198980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 242 - 412
Target Start/End: Original strand, 34075140 - 34075307
Alignment:
Q  242 ctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttc 341  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| || ||||| ||||||||||||||||||||||| |||||||||| |||||||||||    
T  34075140 ctttcatccaccaaaaacataatttttaatttgtta-tcgaaaagcagttatagtgattcatatcttaaattgaatcgtatacatctcaattgaattttc 34075238  T
Q  342 acaacacagcctca-cttttttaccattcattttcttcttcttccaggatacgtctatgtgaagtatcttat 412  Q
    | ||||||  ||||  ||||||||  |||||||  || ||||| |||||||||||| |||||||||||||||    
T  34075239 ataacacaatctcattttttttacacttcattt--tttttctt-caggatacgtctttgtgaagtatcttat 34075307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 265 - 371
Target Start/End: Original strand, 10037871 - 10037977
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||| ||||| ||||| |||||| | ||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||  | |||||||||||||    
T  10037871 ttttaagtggttcatcgagaaacaaatctactgatgcatatctaaaattgaatcatatacatctccattgaattttcgcaacattgtctcacttttttac 10037970  T
Q  365 cattcat 371  Q
    | |||||    
T  10037971 ccttcat 10037977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 143 - 340
Target Start/End: Complemental strand, 34733988 - 34733793
Alignment:
Q  143 ttttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgc 242  Q
    |||||||||||||||||   |||||| ||||||||||||||||  ||| || ||||| ||||||||   |||||| ||| ||| | ||  || || || |    
T  34733988 ttttcattcatatgttaggatatcaataaatgcatcaataaaaacacttaaaacaaattttgtttaacgttgatttatttaattttct--ctttcgttac 34733891  T
Q  243 tttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaatttt 340  Q
     ||||||||||||||| ||||| |||||||||||||| |||||| |||||| |||||| |||| |||| || ||||| ||| ||||||||||| ||||    
T  34733890 cttcatccaccaaaaatataatatttaattggttaattgaaaaataattatgctgatttatattttaacttaaatcacatatatctccattgattttt 34733793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 265 - 412
Target Start/End: Complemental strand, 53586516 - 53586375
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||| | ||| ||||| ||||||||||| |||| ||||||| ||||||||||||||||||||| ||||||| || ||||||  | |||||| ||||||    
T  53586516 ttttaagtagttcatcgagaaacaattatagtgatgcatatctgaaattgaatcatatacatctctattgaatgtttacaacattgtctcactattttac 53586417  T
Q  365 cattcattttcttcttcttccaggatacgtctatgtgaagtatcttat 412  Q
    | ||||      |||| ||| ||||||||| | |||||||||||||||    
T  53586416 ccttca------tctttttctaggatacgtatctgtgaagtatcttat 53586375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 121 - 347
Target Start/End: Complemental strand, 44987522 - 44987299
Alignment:
Q  121 tttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgat 220  Q
    |||||||||| |||||||  |||||||| ||||||||||   | |||||| |  ||||| ||||||||||| |  |||| ||||| || | |||||| ||    
T  44987522 tttttatatagatcatatcatattttcaatcatatgttaagatttcaacataaacatcattaaaagaactcga--caaattttgtataatgttgattaat 44987425  T
Q  221 tgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcat 320  Q
    |||||||| | ||| || || | ||||||||| | ||  |||||||| || | ||| || || |||||||| ||| ||| ||||||| ||||||||||||    
T  44987424 tgaatctcttctctttcgttaccttcatccacaagaagtataatttt-aagtagttcattgagaaacaattctaccgatgcatatctaaaattgaatcat 44987326  T
Q  321 atacatctccattgaattttcacaaca 347  Q
     |||||||| | |||||||| ||||||    
T  44987325 gtacatctcgagtgaatttttacaaca 44987299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 119 - 371
Target Start/End: Original strand, 35823460 - 35823701
Alignment:
Q  119 agtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattg 218  Q
    ||||||| ||||||||||||| |||||||||||||||||||   |||||| | | |  ||| ||||||||||||| ||||| ||||| || | ||||||     
T  35823460 agtttttttataaatcatattttattttcattcatatgttaggatatcaatagaagtgtcattaaaagaactcaacacaaattttgtataatgttgatta 35823559  T
Q  219 attgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatc 318  Q
    |||||||||| | |||||| ||   ||||||||| |  || ||           |||| ||||| |||||||| |||| |||||||||| |||||||||     
T  35823560 attgaatctcttctctctcgttaacttcatccacaagtaaaat-----------ggtttatcgagaaacaattctactaattcatatctaaaattgaatt 35823648  T
Q  319 atatacatctccattgaattttcacaacacagcctcacttttttaccattcat 371  Q
    |||||||| |||| |   |||||||||||  | |||||||| ||||| |||||    
T  35823649 atatacatttccaatattttttcacaacattgtctcactttcttacccttcat 35823701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 371
Target Start/End: Complemental strand, 4776034 - 4775800
Alignment:
Q  135 atattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatct 234  Q
    ||||| ||||||||| ||||||||||| |||||||| | |||||| | ||||||||||| ||||| ||||| || |   |||| | | |||||||| | |    
T  4776034 atattatattttcatccatatgttataatatcaacataagcatcattgaaagaactcaacacaaattttgtctaatgccgattaactaaatctcctcttt 4775935  T
Q  235 ctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattg 334  Q
    |||  |   ||||||||| | ||  |||| |||||| ||| | ||||| |||||||||   |||| ||||||| |||||| ||||||||||| |||| |     
T  4775934 ctcgctaacttcatccacaataagtataa-ttttaagtggattatcgagaaacaattactttgatgcatatctaaaattg-atcatatacatttccacta 4775837  T
Q  335 aattttcacaacacagcctcacttttttaccattcat 371  Q
    |||| ||||||||  | |||||||||||||| |||||    
T  4775836 aattatcacaacattgtctcacttttttacccttcat 4775800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 10632355 - 10632247
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaa----aaagtttttatataaatcatattctattttcat 149  Q
    |||| |||||||| ||||| ||||  ||||||| |||||||||||||| |||||||||  |||    ||||||||  ||||||||||||| |||||||||    
T  10632355 aatattatataatcataaatgtcacaatttaca-aaaaataatacatgtgatcaaaattaaaaatgtaaagttttcgtataaatcatattttattttcat 10632257  T
Q  150 tcatatgtta 159  Q
    ||||||||||    
T  10632256 tcatatgtta 10632247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 412
Target Start/End: Complemental strand, 27675536 - 27675413
Alignment:
Q  284 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcattttcttcttctt 383  Q
    |||||||| || |||| ||||||| |||||||||||||||||||||   ||||| |||||||||  | |||||| ||||||| |||||||     || ||    
T  27675536 aaacaattctattgatgcatatctaaaattgaatcatatacatctctgctgaatcttcacaacattgtctcactattttacccttcattt-----ttttt 27675442  T
Q  384 ccaggatacgtctatgtgaagtatcttat 412  Q
    | ||||||||| |||||||||| ||||||    
T  27675441 ctaggatacgtatatgtgaagtgtcttat 27675413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 288
Target Start/End: Original strand, 25204405 - 25204522
Alignment:
Q  179 aataaaagaactcaatacaaagtttgtttactattgattgattgaatctcct-atctctct--ttgctttcatccaccaaaaa-----cataatttttaa 270  Q
    |||||||||| |||| ||||| |||||||| | ||||||||||||||||| | ||||||||  || ||||||||||  |||||     || |||||||||    
T  25204405 aataaaagaattcaaaacaaattttgtttaatgttgattgattgaatctcatcatctctctggttactttcatccataaaaaaaaaaacacaatttttaa 25204504  T
Q  271 ttggttaatcgaaaaaca 288  Q
    ||||||||||||||||||    
T  25204505 ttggttaatcgaaaaaca 25204522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 265 - 363
Target Start/End: Complemental strand, 45774124 - 45774026
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcactttttta 363  Q
    |||||| ||||| ||||| |||||||| || ||||  |||||| ||||||||||||||||||||  | |||||||| ||||||  | ||||||||||||    
T  45774124 ttttaagtggttcatcgagaaacaattctattgatgtatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcactttttta 45774026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 28102017 - 28102098
Alignment:
Q  266 tttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaaca 347  Q
    ||||| ||||| ||||| |||||||| |||| |||||||| | ||||||||| ||||||||||| | |||||||||| ||||    
T  28102017 tttaagtggttcatcgagaaacaattttacttattcatatataaaattgaataatatacatctcaactgaattttcataaca 28102098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 364
Target Start/End: Original strand, 35103543 - 35103620
Alignment:
Q  287 caattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||||| |||| ||||||| |||||||||||||||||| |  | |||||||| ||||||  | |||||||||||||    
T  35103543 caattataatgatgcatatctaaaattgaatcatatacatttataatgaatttttacaacattgtctcacttttttac 35103620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 47724673 - 47724735
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa 117  Q
    ||||||||||||| |||||||||   ||||||| |||||||||||||| |||||||||| ||||    
T  47724673 aatactatataatcataaaagtcgcaatttaca-aaaaataatacatgtgatcaaaataaaaaa 47724735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 325
Target Start/End: Original strand, 53018485 - 53018632
Alignment:
Q  175 catcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattgg 274  Q
    ||||| ||||||||||||| | ||| ||| |||| | |||||| | |||||| |||||||| || ||  ||||||||| | ||  |||||||| || ||     
T  53018485 catcattaaaagaactcaacataaattttatttaatgttgattaactgaatcacctatctcgctatg--ttcatccacaataagtataatttt-aactga 53018581  T
Q  275 ttaatcgaaaaacaattatactgattcatatcttaaattgaatcatataca 325  Q
    || || || |||||||| || |||| ||||||| |||||||||||||||||    
T  53018582 ttcattgagaaacaattctattgatgcatatctaaaattgaatcatataca 53018632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 38947679 - 38947745
Alignment:
Q  96 tacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcatatgtt 158  Q
    |||||| |||||||||||||||    || ||||  ||||||| ||||||||||||||||||||||||    
T  38947679 tacatgtgatcaaaatataaaatataaaattttcgtataaattatattctattttcattcatatgtt 38947745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 374
Target Start/End: Original strand, 43770726 - 43770786
Alignment:
Q  314 gaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcatttt 374  Q
    ||||||||||||| | |||||| |||||| ||||||| ||||  |||||||| ||||||||    
T  43770726 gaatcatatacatattcattgatttttcataacacagtctcatatttttacccttcatttt 43770786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 54 - 374
Target Start/End: Complemental strand, 26352920 - 26352596
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 149  Q
    ||||||||| ||| ||||||||||| ||||||| |||||||||||| |||||||||||| ||||    |||||||  ||||||||||||| |||||||||    
T  26352920 aatactataaaatcataaaagtcataatttaca-aaaaataatacaagcgatcaaaataaaaaatgtaaagttttcgtataaatcatattttattttcat 26352822  T
Q  150 tcata-tgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcat 248  Q
    ||||| |||||   |||||||||||  |||  ||||||||||||| || | |||| |||| | ||||||||||||||||||  ||| || || |||||||    
T  26352821 tcataatgttaggatatcaacaaatttatcggtaaaagaactcaaaactacgtttatttaatgttgattgattgaatctcccctctttcattactttcat 26352722  T
Q  249 ccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacac 348  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  26352721 ccaccaaaaacataatttttaattggttaatcgagaaacaattatagtgactcatatcttaaattgaatcatacacatctccattgaattttcacaaaac 26352622  T
Q  349 agcctcacttttttaccattcatttt 374  Q
    || |||||||||||||| ||||||||    
T  26352621 agactcacttttttacctttcatttt 26352596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 57 - 412
Target Start/End: Complemental strand, 36925856 - 36925509
Alignment:
Q  57 actatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaa---aaagtttttatataaatcatattctattttcattcat 153  Q
    |||||||||  ||||||||||  ||||||| |||||||||||||| |||||||||| |||   ||||||||  || |||||||||||||||||||||||     
T  36925856 actatataaccataaaagtcacaatttaca-aaaaataatacatgtgatcaaaataaaaatgtaaagttttcgtaaaaatcatattctattttcattcac 36925758  T
Q  154 atgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatccacc 253  Q
    |||||| | ||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| |||||||  ||||||||| |||    
T  36925757 atgttaga-tatcaacaaatacatcaataaaagaactcaaaacaaagtttgtttaatgttgattgattgaatctcctctctctctc-gctttcatctacc 36925660  T
Q  254 aaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcct 353  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||    ||||| ||||||||  ||    
T  36925659 aaaaacataatttttaattggttaatcgaaaaacaattatagtcattcatatcttaaattgactcatatacatctcca----atttttacaacacaatct 36925564  T
Q  354 cacttttttaccattcattttcttcttcttccaggatacgtctatgtgaagtatcttat 412  Q
    ||  |||||||| |||||||     ||| ||||||||||||||   |||||||||||||    
T  36925563 catgtttttacccttcattta----ttcctccaggatacgtctcaatgaagtatcttat 36925509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 54 - 374
Target Start/End: Complemental strand, 3353439 - 3353119
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa---aagtttttatataaatcatattctattttcatt 150  Q
    ||||||||||||| |||||||||   ||||||| |||||||| |||||  ||||||||| ||     |||||||  |||||||||||| | |||||||||    
T  3353439 aatactatataatcataaaagtcccaatttaca-aaaaataacacatg--atcaaaataaaattgtgaagttttcgtataaatcatatccaattttcatt 3353343  T
Q  151 catatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatcc 250  Q
    |||||||||   |||||||||||| || ||||||||||||||| |||||||||||||| | ||||||||| ||||||| | || ||| || ||||||||     
T  3353342 catatgttaggatatcaacaaatgtatgaataaaagaactcaaaacaaagtttgtttaatgttgattgatcgaatctcttctccctcgttactttcatct 3353243  T
Q  251 accaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacag 350  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||    
T  3353242 accaaaaacataatttttaactggttaatcgaaaaacaattataatgattcatatcttaaattgaatcatatacatttccattaaattttcacaacatag 3353143  T
Q  351 cctcacttttttaccattcatttt 374  Q
     |||||||||| ||  ||||||||    
T  3353142 tctcactttttgactcttcatttt 3353119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 128 - 374
Target Start/End: Complemental strand, 45388997 - 45388750
Alignment:
Q  128 ataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatct 227  Q
    |||||||||||| |||||||||||||||||||   ||| |||||||||||||||||||||||| || ||||||| |||||| | ||||||||||||||||    
T  45388997 ataaatcatattatattttcattcatatgttaggatattaacaaatgcatcaataaaagaacttaaaacaaagtatgtttaatgttgattgattgaatct 45388898  T
Q  228 cctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatc 327  Q
    | | |||||| || ||||||| || |||||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||| ||  |||    
T  45388897 catctctctcgttactttcattcaacaaaaacataatttttaattagttaatcgaaaaataattatagtgatttatatcttaaattgaatcaaattaatc 45388798  T
Q  328 tccattgaattttcacaacacagcctca-cttttttaccattcatttt 374  Q
    ||||||||||||||||||||||| ||||  ||||||||| ||||||||    
T  45388797 tccattgaattttcacaacacagtctcattttttttacccttcatttt 45388750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 167 - 364
Target Start/End: Complemental strand, 18858680 - 18858483
Alignment:
Q  167 aacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatccaccaaaaacataattt 266  Q
    |||||||||||||||||||||| | || |||||||||||||| |  |||||||||||||||| | |||||| || |||||||| |||||||||||||||     
T  18858680 aacaaatgcatcaataaaagaatttaaaacaaagtttgtttaatgctgattgattgaatctcttctctctcgttactttcatctaccaaaaacataatta 18858581  T
Q  267 ttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| |||||||||| |||| ||||   ||||||||||||    
T  18858580 ttaattggttaatcgaaaaacaattatattcattcatatcataaattgaatcatatacatcttcattgaatttacacatcacatattcacttttttac 18858483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 224 - 362
Target Start/End: Original strand, 43355706 - 43355843
Alignment:
Q  224 atctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatata 323  Q
    ||||||| |||||| || ||||||||||||||||||||||||||||||| |||| | |||||||||||||| ||||||||||||||| ||||||||||||    
T  43355706 atctcctctctctcattactttcatccaccaaaaacataatttttaattcgtta-tagaaaaacaattatagtgattcatatcttaacttgaatcatata 43355804  T
Q  324 catctccattgaattttcacaacacagcctcactttttt 362  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  43355805 catctccattgaattttcacaacacagtctcattttttt 43355843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 118 - 374
Target Start/End: Complemental strand, 44986650 - 44986404
Alignment:
Q  118 aagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgatt 217  Q
    |||||||  ||||||||||||| |||||||| | |||| |||   ||||||||||||||||||||||||||| ||| |||||||||||||| | ||||||    
T  44986650 aagttttagtataaatcatattatattttcacttatatattaagatatcaacaaatgcatcaataaaagaacccaaaacaaagtttgtttaatgttgatt 44986551  T
Q  218 gattgaatctcctatctc-tctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaa 316  Q
    ||||||||||||| |||| || |  |||| |||||  |||||||||||||| | |||||||||||||||||||||||| || |||||      |||||||    
T  44986550 gattgaatctcctttctcgtcat--cttt-atccaagaaaaacataattttcagttggttaatcgaaaaacaattatattgtttcat------aattgaa 44986460  T
Q  317 tcatatacatctccattgaattttcacaacacagcctcacttttttaccattcatttt 374  Q
    |||||||||  |||||||||||||||||| |||| ||||  |||||| ||||||||||    
T  44986459 tcatataca--tccattgaattttcacaatacagtctcaactttttatcattcatttt 44986404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 140 - 372
Target Start/End: Original strand, 36525847 - 36526068
Alignment:
Q  140 ctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctc--tc 237  Q
    |||||||||||||||| |||     ||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||||||  ||| ||||  ||    
T  36525847 ctattttcattcatatattaggacgtcaacaaatgcatcaataaaaaaactcaaaacaaaatttgtttaatattgattgattgaattacctgtctctgtc 36525946  T
Q  238 tttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaat 337  Q
     || || ||||||| |||||||||||||| |||||| |||||||||||||| ||||| ||             |||||||||| ||||||||||||||||    
T  36525947 gttactctcatccaacaaaaacataatttgtaattgattaatcgaaaaacagttatattg-------------attgaatcatgtacatctccattgaat 36526033  T
Q  338 tttcacaacacagcctcacttttttaccattcatt 372  Q
    | ||||||||||  |||||||||||||| ||||||    
T  36526034 tctcacaacacaatctcacttttttacccttcatt 36526068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 347
Target Start/End: Original strand, 16496758 - 16496884
Alignment:
Q  220 ttgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatca 319  Q
    ||||||||| | |||||  |||| ||||||||| ||||| ||| |||| || ||||| ||||| |||||||| |||||||||| |||| |||||||||||    
T  16496758 ttgaatctcatctctcttattgcattcatccacaaaaaatatactttt-aagtggttcatcgagaaacaattttactgattcacatctaaaattgaatca 16496856  T
Q  320 tatacatctccattgaattttcacaaca 347  Q
    ||||||||| ||||||||||||||||||    
T  16496857 tatacatcttcattgaattttcacaaca 16496884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 273 - 371
Target Start/End: Complemental strand, 41323996 - 41323898
Alignment:
Q  273 ggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcat 371  Q
    |||| ||||| |||||||| ||||||| ||||||| ||||||||||||||||||||| | |||||||| ||||||  | |||||||||||||| |||||    
T  41323996 ggttcatcgagaaacaattttactgatgcatatctaaaattgaatcatatacatctctactgaatttttacaacattgtctcacttttttaccgttcat 41323898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 371
Target Start/End: Complemental strand, 7017950 - 7017844
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||| ||||| ||||| |||||||| |||  || ||||||| ||||||||||||||||||||| | |||||||| ||||||  | |||||||||||||    
T  7017950 ttttaagtggtttatcgagaaacaattctacccatgcatatctaaaattgaatcatatacatctctactgaatttttacaacattgtctcacttttttac 7017851  T
Q  365 cattcat 371  Q
    | |||||    
T  7017850 ccttcat 7017844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 371
Target Start/End: Original strand, 37272917 - 37273023
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||| ||||| |||||||||||||| || |||| ||| ||| ||||||||||||||||||||| | |||||||| ||||||  | || ||||||||||    
T  37272917 ttttaagtggttcatcgaaaaacaattttattgatgcatgtctaaaattgaatcatatacatctctactgaatttttacaacattgtcttacttttttac 37273016  T
Q  365 cattcat 371  Q
    | |||||    
T  37273017 ctttcat 37273023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 212 - 365
Target Start/End: Complemental strand, 36467374 - 36467222
Alignment:
Q  212 ttgattgattgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaa 311  Q
    |||||| |||||||| | | |||||| || | ||||||||| | || ||||||||| || ||||| ||||| |||||||| |||| || ||||||| |||    
T  36467374 ttgattaattgaatcacatctctctcattaccttcatccacaagaatcataatttt-aagtggttcatcgagaaacaattttacttatgcatatctaaaa 36467276  T
Q  312 ttgaatcatatacatctccattgaattttcacaacacagcctcacttttttacc 365  Q
    ||||||||||||||| || | |||||||| ||||||  | |||||||| |||||    
T  36467275 ttgaatcatatacatttcaactgaatttttacaacattgtctcactttcttacc 36467222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 121 - 342
Target Start/End: Complemental strand, 11458070 - 11457848
Alignment:
Q  121 tttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgat 220  Q
    |||| |||||||| ||||| ||||||||||||||| ||||  |||||||| | |||||| ||||| ||| ||| ||||| ||||| || | |||||| ||    
T  11458070 ttttcatataaataatattatattttcattcatatattatgatatcaacataagcatcattaaaataacgcaacacaaattttgtctaatgttgattaat 11457971  T
Q  221 tgaatctcctatctctctttgctttcatccaccaaa--aacat-aatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaat 317  Q
    | |||||  | |||||| || | ||||||||| |||  || || ||  ||||| ||||| ||| ||||| |||||||||  || | |||| || ||||||    
T  11457970 taaatct--tctctctcattaccttcatccacaaaaataaaataaaaatttaagtggttcatccaaaaataattatactattttagatctaaagttgaat 11457873  T
Q  318 catatacatctccattgaattttca 342  Q
    ||||||||  |||||||||||||||    
T  11457872 catatacacttccattgaattttca 11457848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 30776750 - 30776680
Alignment:
Q  306 cttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcattttct 376  Q
    ||||| |||||||||||||||||| |||||||||| | ||||||| |||||||||||||| |||| |||||    
T  30776750 cttaatttgaatcatatacatctcgattgaatttttataacacagtctcacttttttacccttcaatttct 30776680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 365
Target Start/End: Complemental strand, 35298551 - 35298451
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||| ||||| ||||| ||| |||| || |||| ||| ||| ||||||||| ||||||||||| | |||||||| ||||||  | |||||||||||||    
T  35298551 ttttaagtggttcatcgagaaataattctattgatgcatttctaaaattgaattatatacatctctactgaatttttacaacattgtctcacttttttac 35298452  T
Q  365 c 365  Q
    |    
T  35298451 c 35298451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 371
Target Start/End: Original strand, 11562733 - 11562837
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||| ||||| ||||| |||||||| |  |||||||||||  ||||||||||||||| ||||| | |||||||  ||||||  | |||||||||||||    
T  11562733 ttttaagtggtttatcgagaaacaattgt--tgattcatatccaaaattgaatcatatatatctctactgaatttctacaacattgtctcacttttttac 11562830  T
Q  365 cattcat 371  Q
    | |||||    
T  11562831 ccttcat 11562837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 14749606 - 14749544
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa 117  Q
    ||||||||||||| ||||||||| | ||||||| |||||||||||||| |||||||||| ||||    
T  14749606 aatactatataatcataaaagtcgtgatttaca-aaaaataatacatgtgatcaaaataaaaaa 14749544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 45389076 - 45389019
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaata 112  Q
    ||||||||||||| ||||||||||  ||||||| |||||||||||||| ||||||||||    
T  45389076 aatactatataatcataaaagtcacaatttaca-aaaaataatacatgtgatcaaaata 45389019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 340
Target Start/End: Complemental strand, 30485795 - 30485631
Alignment:
Q  175 catcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattgg 274  Q
    ||||| ||||||||||||| ||||| ||| | || | |||||| |||||||| ||| |||||| || | ||||||||| | ||  ||||  ||||| |||    
T  30485795 catcattaaaagaactcaacacaaactttatctaatgttgattaattgaatcacctttctctcattaccttcatccacaagaagtataa-atttaagtgg 30485697  T
Q  275 ttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaatttt 340  Q
    || | ||| |||||||| || |||| ||||||| |||||||| || | ||||||| | ||||||||    
T  30485696 ttcaccgagaaacaattctaatgatgcatatctaaaattgaaccacacacatctctactgaatttt 30485631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 38221640 - 38221720
Alignment:
Q  284 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||||| || |||| ||||||  ||||||||||||||||||||| ||||||| || ||||||  | |||||| ||||||    
T  38221640 aaacaattctagtgatgcatatccaaaattgaatcatatacatctctattgaatgtttacaacattgtctcactcttttac 38221720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 325
Target Start/End: Complemental strand, 40498736 - 40498676
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatataca 325  Q
    |||||| ||||| ||||| |||||||| || |||| ||||||| |||||||||||||||||    
T  40498736 ttttaagtggttcatcgagaaacaattctagtgatgcatatctaaaattgaatcatataca 40498676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 43344689 - 43344752
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaa 118  Q
    ||||||||||||| ||||||||||  ||| ||| |||||||||||||| |||||||||| |||||    
T  43344689 aatactatataatcataaaagtcacaattcaca-aaaaataatacatgtgatcaaaataaaaaaa 43344752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 371
Target Start/End: Complemental strand, 2788999 - 2788912
Alignment:
Q  284 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcat 371  Q
    |||||||| |||| || ||||| | ||||||||| |||||||| |||||| || |||||||| |  | |||||||||||| |||||||    
T  2788999 aaacaattttactaatgcatatttaaaattgaatgatatacatttccattaaactttcacaatattgtctcacttttttaacattcat 2788912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 18561170 - 18561115
Alignment:
Q  309 aaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||||||||||||||| |||| |||||||||| ||||  | |||||||||||||    
T  18561170 aaattgaatcatatacatttccactgaattttcaaaacattgtctcacttttttac 18561115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 371
Target Start/End: Original strand, 38558674 - 38558760
Alignment:
Q  284 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcat 371  Q
    ||||||||||||||||  |||||| ||||||||||  ||| |||| || | |||||||||||| | | |||||||||||||| |||||    
T  38558674 aaacaattatactgatatatatctaaaattgaatc-gatatatcttcaataaattttcacaactctgtctcacttttttacctttcat 38558760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 364
Target Start/End: Original strand, 42794781 - 42794880
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||| || || ||||| |||||||| || |||| ||||||| ||||||| ||| ||||||||  | |||||||| ||||||  | |||||||||||||    
T  42794781 ttttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcacatacatctataatgaatttttacaacattgtctcacttttttac 42794880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 327
Target Start/End: Complemental strand, 38140681 - 38140639
Alignment:
Q  285 aacaattatactgattcatatcttaaattgaatcatatacatc 327  Q
    |||||||||| |||| ||||||| |||||||||||||||||||    
T  38140681 aacaattatattgatgcatatctaaaattgaatcatatacatc 38140639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 35428829 - 35428773
Alignment:
Q  315 aatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcat 371  Q
    ||||||||||||||||| |||||||||| | ||  | |||||||||||||| |||||    
T  35428829 aatcatatacatctccactgaattttcagatcattgtctcacttttttacccttcat 35428773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 6e-78; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 58 - 374
Target Start/End: Original strand, 31396988 - 31397307
Alignment:
Q  58 ctatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcat 153  Q
    ||||||||| ||||||||||  ||||||| |||| |||||| || |||||||||| ||||    || |||| |||||||||||||| |||||| ||| ||    
T  31396988 ctatataatcataaaagtcacaatttaca-aaaagtaatacttgtgatcaaaataaaaaatataaaattttcatataaatcatattttatttttatttat 31397086  T
Q  154 atgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatccacc 253  Q
    |||||    ||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| || | |||||| || ||||||| ||||    
T  31397087 atgttgggatatcaacaaatgcatcaataaaagaactcaaaacaaagtttgtttaatgttgattgattgaatatcttctctctcgttactttcattcacc 31397186  T
Q  254 aaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcct 353  Q
    || ||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||| || |||||| |||||||||||||||| ||    
T  31397187 aataacataattttcaattggttaattgaaaaacaattatagtgatttatatcttaaattgagtcatatatatttccattcaattttcacaacacagtct 31397286  T
Q  354 cacttttttaccattcatttt 374  Q
    |||||||||||| ||| ||||    
T  31397287 cacttttttacctttcgtttt 31397307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 58 - 412
Target Start/End: Original strand, 44797994 - 44798348
Alignment:
Q  58 ctatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaa----aaagtttttatataaatcatattctattttcattcat 153  Q
    ||||||||| ||||||||||  ||||||| ||||| |||||||| |||||||||| |||    ||||||||  ||||||||||||| |||||||||||||    
T  44797994 ctatataatcataaaagtcacaatttacaaaaaaaaaatacatgtgatcaaaataaaaattgtaaagttttcgtataaatcatattatattttcattcat 44798093  T
Q  154 atgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatccacc 253  Q
    ||||||   ||||||||||||  ||||||||||||||||| ||||||||| ||||   |||||||||||||||| ||  ||||| || |||| |||||||    
T  44798094 atgttaggatatcaacaaatgtttcaataaaagaactcaaaacaaagtttatttaacgttgattgattgaatcttct--ctctcgttacttttatccacc 44798191  T
Q  254 aaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcct 353  Q
    |||||||||| ||||||||||||||| || ||| ||||||| ||||||||||||||||||||| || ||||||||||| |||||||||||||||||   |    
T  44798192 aaaaacataaattttaattggttaattgagaaataattatagtgattcatatcttaaattgaaacacatacatctccactgaattttcacaacacaattt 44798291  T
Q  354 cacttttttaccattcattttcttcttcttccaggatacgtctatgtgaagtatcttat 412  Q
     | ||||||||| ||||||||  |||  ||  | ||||||||| |||||||||||||||    
T  44798292 tatttttttacccttcatttttctctcttt--aagatacgtctctgtgaagtatcttat 44798348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 226 - 412
Target Start/End: Complemental strand, 48138652 - 48138473
Alignment:
Q  226 ctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatataca 325  Q
    ||||| |||||| ||  ||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  48138652 ctcctctctctcgttattttcatccaccaaaaacataatttttaattggtta-tcgaaaaataattatagtgattcatatcttaaattgaatcatataca 48138554  T
Q  326 tctccattgaattttcacaacacagcctcacttttttaccattcattttcttcttcttccaggatacgtctatgtgaagtatcttat 412  Q
    |||||||| |||||||| ||||||| |||| || ||||   ||||||      || ||||||||||||||| |||||||||||||||    
T  48138553 tctccattaaattttcagaacacagtctcatttatttaagcttcatt------tttttccaggatacgtctctgtgaagtatcttat 48138473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 211 - 363
Target Start/End: Original strand, 46192231 - 46192383
Alignment:
Q  211 attgattgattgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaa 310  Q
    |||||| ||||||||||| | | |||| || |||||||||| |||||||||| ||||||  || ||||| |||||||||||||  |||||||||||||||    
T  46192231 attgatagattgaatctcatctatctcgttactttcatccaacaaaaacatattttttatatgattaatagaaaaacaattattgtgattcatatcttaa 46192330  T
Q  311 attgaatcatatacatctccattgaattttcacaacacagcctcactttttta 363  Q
    ||| |||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  46192331 attaaatcatatacatcttcattgaattttcacaacacattctcactttttta 46192383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 255 - 344
Target Start/End: Complemental strand, 16817964 - 16817877
Alignment:
Q  255 aaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcaca 344  Q
    ||||||||| ||| ||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||    
T  16817964 aaaacataaatttaaattgattaatcgaaaaacaattatactgattca-atcttaaattaaatcatatacatctccattg-attttcaca 16817877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 24699882 - 24699810
Alignment:
Q  245 tcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatc 318  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||    
T  24699882 tcatccaccaaaaacataatttttaattggtta-tcgaaaaacaattatagtaattcatatcttaaattgaatc 24699810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 118 - 223
Target Start/End: Complemental strand, 47278002 - 47277897
Alignment:
Q  118 aagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgatt 217  Q
    |||||||| ||||||| || ||||||||||| |||||| |||   ||||||||||||| |||||||||||| |||| |||||||||| ||| | ||||||    
T  47278002 aagtttttgtataaataattttctattttcactcatatattaggatatcaacaaatgcttcaataaaagaattcaaaacaaagtttgattaatgttgatt 47277903  T
Q  218 gattga 223  Q
    ||||||    
T  47277902 gattga 47277897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 2483847 - 2483783
Alignment:
Q  300 tcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||| || |||||||||||||    
T  2483847 tcatatcttaaattgaatcatatacatcttcattgcattttcacaacatagtctcacttttttac 2483783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 25482609 - 25482674
Alignment:
Q  263 atttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatct 328  Q
    |||||||| || || ||||||||||||||||| |||| ||||||| ||||||||||||||||||||    
T  25482609 atttttaagtgtttcatcgaaaaacaattatattgatgcatatctaaaattgaatcatatacatct 25482674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 48138767 - 48138659
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 149  Q
    ||||||||||||| |||||| |||  ||||||| |||||||||| ||| |||||||||| ||||    |||||||  ||||||||||||| ||||||| |    
T  48138767 aatactatataatcataaaattcacaatttaca-aaaaataatatatgtgatcaaaataaaaaatgtaaagttttcgtataaatcatattatattttcgt 48138669  T
Q  150 tcatatgtta 159  Q
    ||||||||||    
T  48138668 tcatatgtta 48138659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 364
Target Start/End: Original strand, 45648231 - 45648330
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||| ||||| | ||| |||||||| || |||| ||||||| ||||||||||||||||||||  | |||||||| ||||||  | |||||||||||||    
T  45648231 ttttaagtggttcaccgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttac 45648330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 371
Target Start/End: Complemental strand, 22201353 - 22201109
Alignment:
Q  127 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatc 226  Q
    ||||||||||||| ||||||||||||||  ||| | ||||| || | | |||| ||||| | ||||| ||||| ||||| ||||||||||| |||||||     
T  22201353 tataaatcatattatattttcattcatacattagaatatcagcagaagtatcattaaaatagctcaacacaaattttgtctactattgattaattgaata 22201254  T
Q  227 tcct-atctc-tctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatac 324  Q
    || | || || || || | |||||  |  | || ||||||||| || ||||| ||||| |||||||| ||| ||| || |||| ||||| || |||||||    
T  22201253 tcttcatttcctcattaccttcattaataagaagcataatttt-aagtggtttatcgagaaacaattctaccgataca-atctaaaattaaaacatatac 22201156  T
Q  325 atctccattgaattttcacaacacagcctcacttttttaccattcat 371  Q
    ||||||| |||||||| | ||||  | |||| |||||||||||||||    
T  22201155 atctccactgaatttttagaacattgtctcatttttttaccattcat 22201109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 371
Target Start/End: Original strand, 22236468 - 22236712
Alignment:
Q  127 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatc 226  Q
    ||||||||||||| ||||||||||||||  ||| | ||||| || | | |||| ||||| | ||||| ||||| ||||| ||||||||||| |||||||     
T  22236468 tataaatcatattatattttcattcatacattagaatatcagcagaagtatcattaaaatagctcaacacaaattttgtctactattgattaattgaata 22236567  T
Q  227 tcct-atct-ctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatac 324  Q
    || | || | ||| || | |||||  |  | || ||||| |||||| ||||| ||||| |||||||| ||| ||| || |||| ||||| || |||||||    
T  22236568 tcttcatttcctcattaccttcattaataagaagcataa-ttttaagtggtttatcgagaaacaattctaccgataca-atctaaaattaaaacatatac 22236665  T
Q  325 atctccattgaattttcacaacacagcctcacttttttaccattcat 371  Q
    ||||||| |||||||| | ||||  | |||| |||||||||||||||    
T  22236666 atctccactgaatttttagaacattgtctcatttttttaccattcat 22236712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 369
Target Start/End: Complemental strand, 47277199 - 47277149
Alignment:
Q  319 atatacatctccattgaattttcacaacacagcctcacttttttaccattc 369  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  47277199 atatacatctctattgaattttcacaacacaatctcacttttttaccattc 47277149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 3094303 - 3094258
Alignment:
Q  286 acaattatactgattcatatcttaaattgaatcatatacatctcca 331  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||    
T  3094303 acaattaaactaattcatatcttaaattgaatcatatacatctcca 3094258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 362
Target Start/End: Original strand, 3751503 - 3751600
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcactttttt 362  Q
    |||||| || || ||||| |||||||| || |||| ||||||| ||||||||||||||||||||| | | | |||||||||||  | |||||||||||    
T  3751503 ttttaagtgattcatcgagaaacaattttattgatgcatatctaaaattgaatcatatacatctctactaagttttcacaacattgtctcactttttt 3751600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 328
Target Start/End: Complemental strand, 7858053 - 7857938
Alignment:
Q  212 ttgattgattgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaa 311  Q
    |||||| |||||||||||| |||||  || |  |||||||| | ||| ||| ||||||| ||||| |  || |||||||| ||||| ||||||||| |||    
T  7858053 ttgattaattgaatctcctctctcttgttaccatcatccacaataaatata-tttttaagtggttcaatgagaaacaattctactgtttcatatctaaaa 7857955  T
Q  312 ttgaatcatatacatct 328  Q
    |||||||||||||||||    
T  7857954 ttgaatcatatacatct 7857938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 362
Target Start/End: Original strand, 42040377 - 42040561
Alignment:
Q  175 catcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattgg 274  Q
    ||||||||||||||||||| ||||| ||| | || | |||||| | |||||| |  |||||||  ||| ||||||||| | ||  |||||||| || ||     
T  42040377 catcaataaaagaactcaacacaaattttatctaatgttgattaactgaatcac--atctctcgatgcgttcatccacaagaagtataatttt-aagtgt 42040473  T
Q  275 ttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcactttttt 362  Q
    || ||||| | |||||| || |||| ||||||| ||||||| ||||||||||||  | |||||||| ||||||  | |||||||||||    
T  42040474 ttcatcgagagacaattctattgatgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgtctcactttttt 42040561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 371
Target Start/End: Original strand, 47843793 - 47843880
Alignment:
Q  284 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcat 371  Q
    |||||||| || |||| ||||||| ||||||||||||||||||||| | ||| |||| ||||||  | || ||||||||||| |||||    
T  47843793 aaacaattttattgatgcatatctaaaattgaatcatatacatctctactgagtttttacaacattgtctaacttttttacccttcat 47843880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 329
Target Start/End: Complemental strand, 40836503 - 40836439
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctc 329  Q
    |||||| ||||| ||||| |||||||| || |||| ||||||| ||||||||||||||| |||||    
T  40836503 ttttaagtggttcatcgagaaacaattctagtgatgcatatctaaaattgaatcatatagatctc 40836439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 43495761 - 43495825
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctc 329  Q
    |||||| ||||| ||||| |||||||| || |||| ||||||| ||||||||||||||| |||||    
T  43495761 ttttaagtggttcatcgagaaacaattttagtgatgcatatctaaaattgaatcatatatatctc 43495825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 9229429 - 9229488
Alignment:
Q  57 actatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa 117  Q
    |||||||||| |||||||||   ||||||| |||||||||||||| |||||||||| ||||    
T  9229429 actatataatcataaaagtcgcgatttaca-aaaaataatacatgtgatcaaaataaaaaa 9229488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 25311012 - 25311076
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctc 329  Q
    |||||| ||||| ||| | |||||||||||||| | ||||| | ||||| |||||||||||||||    
T  25311012 ttttaagtggttcatcaagaaacaattatactgttgcatatttaaaatttaatcatatacatctc 25311076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 138 - 408
Target Start/End: Original strand, 24611339 - 24611606
Alignment:
Q  138 ttctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctc 237  Q
    ||||||||| |||||||| ||| |  |||||||||||| ||||||||||||||||| |  ||||||||||| | ||||||||||||||||||| |||| |    
T  24611339 ttctatttttattcatatattagaaaatcaacaaatgcttcaataaaagaactcaaaatcaagtttgtttaatgttgattgattgaatctcctctctccc 24611438  T
Q  238 t--ttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattga 335  Q
    |  || |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  24611439 tcgttactttcaaccaccaaaaacataatttttaattggttaattgaaaaacaattatagtgattcatatattaaattgaatcatatacatctccattga 24611538  T
Q  336 attttcacaacacagcctcacttttttaccattcattttcttcttcttccaggatacgtctatgtgaagtatc 408  Q
     |||||||||||||  |||||||||||||| |||||||| |||     ||||||||||||| |||| ||||||    
T  24611539 tttttcacaacacaatctcacttttttacccttcatttttttc-----ccaggatacgtctctgtgtagtatc 24611606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 117 - 374
Target Start/End: Original strand, 31489382 - 31489642
Alignment:
Q  117 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 216  Q
    ||||||||  ||||||||||||| |||||||||||||||||||   ||||| ||||||||||||||||||||||||| ||||| |||||||| | |||||    
T  31489382 aaagttttcgtataaatcatattttattttcattcatatgttaagatatcagcaaatgcatcaataaaagaactcaaaacaaaatttgtttaatgttgat 31489481  T
Q  217 tgattgaatctcctatctctct-ttg---ctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaat 312  Q
    ||||| |||||  ||||||||| |||   | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| | ||||||||    
T  31489482 tgattaaatctattatctctctcttgtcaccttcatccaccaaaaacataaattttaattggttaatcgaaaaacaatcatactgattcgtgtcttaaat 31489581  T
Q  313 tgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcatttt 374  Q
    |||||||||||||| | |||||||||||||||| ||   ||||| |||||||| ||||||||    
T  31489582 tgaatcatatacat-ttcattgaattttcacaatacgctctcacatttttacccttcatttt 31489642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 117 - 364
Target Start/End: Complemental strand, 50387442 - 50387204
Alignment:
Q  117 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 216  Q
    ||||||||  |||||||||||||||||||||||| |||||||| | ||| ||||||| |||||||||| |||||| | | |||||||||||| | |||||    
T  50387442 aaagttttcgtataaatcatattctattttcatttatatgttagaatattaacaaatacatcaataaaggaactc-agataaagtttgtttaatgttgat 50387344  T
Q  217 tgattgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaa 316  Q
    |||||||||||||  |||||| || ||||||||||||||||||||||||||||||||||||||  ||||| ||||||| || ||||||| ||||||||||    
T  50387343 tgattgaatctcc--tctctcgttactttcatccaccaaaaacataatttttaattggttaat--aaaaataattatagtggttcatattttaaattgaa 50387248  T
Q  317 tcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||||    | ||||||||||| ||||||||  |||| ||||||||    
T  50387247 tcatata----tacattgaattttaacaacacaaactcatttttttac 50387204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 239 - 412
Target Start/End: Complemental strand, 47014402 - 47014233
Alignment:
Q  239 ttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaatt 338  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| |||||||||    
T  47014402 ttgctttcatccacccaaaacataatttttaattggttaatcgaaaaacaattataatgatttatatc-taaattgaatcatatacatcttcattgaatt 47014304  T
Q  339 ttcacaacacagcctcacttttttaccattcattttcttcttcttccaggatacgtctatgtgaagtatcttat 412  Q
    ||||||||| |  |||||||||||||   | ||||| ||||||||  ||||||||||| |||||||||||||||    
T  47014303 ttcacaacatattctcacttttttactccttatttt-ttcttctt--aggatacgtctttgtgaagtatcttat 47014233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 54 - 326
Target Start/End: Complemental strand, 21842863 - 21842588
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaa----aaagtttttatataaatcatattctattttcat 149  Q
    ||||||||||||| ||||||||||  |||||| |||||||||||||||  ||||||||| ||     ||||| |   || |||| ||||| |||||||||    
T  21842863 aatactatataatcataaaagtcacgatttac-gaaaaataatacatg--atcaaaataaaagttgtaaagtctacgtaaaaattatattttattttcat 21842767  T
Q  150 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttg--ctttca 247  Q
    ||||| |||    ||||||||||| ||||||||||| ||||  | ||||||||| |||| | |||||||||||||| |||| |||||||| |  |||| |    
T  21842766 tcataagtttggatatcaacaaatacatcaataaaaaaactataaacaaagtttatttaatgttgattgattgaatatcctttctctcttggtactttta 21842667  T
Q  248 tccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacat 326  Q
    ||||||||||| |||||||||| |||||||||||||| |||||||||  ||||||||||||||||| ||||||||||||    
T  21842666 tccaccaaaaatataatttttatttggttaatcgaaatacaattatagcgattcatatcttaaatttaatcatatacat 21842588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 54 - 326
Target Start/End: Complemental strand, 21858504 - 21858231
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaa----aaagtttttatataaatcatattctattttcat 149  Q
    ||||||||||||| ||||||||||  |||||| |||||||||||||||  ||||||||| ||     ||||| |   || |||| |||||||||||||||    
T  21858504 aatactatataatcataaaagtcacgatttac-gaaaaataatacatg--atcaaaataaaagttgtaaagtctacgtaaaaattatattctattttcat 21858408  T
Q  150 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatc 249  Q
    ||||| |||    ||||||||| | ||||||||||| |||   | ||||||||| |||| | |||||||||||||| |||| ||||||  | |||| |||    
T  21858407 tcataagtttggatatcaacaactacatcaataaaaaaacaataaacaaagtttatttaatgttgattgattgaatatcctctctctcggtacttttatc 21858308  T
Q  250 caccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacat 326  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||  ||||||||||||||||| ||||||||||||    
T  21858307 caccaaaaatataatttttatttggttaatcgaaatacaattatagcgattcatatcttaaatttaatcatatacat 21858231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 212 - 408
Target Start/End: Original strand, 1341626 - 1341819
Alignment:
Q  212 ttgattgattgaatctcctatctctctt--tgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatctta 309  Q
    |||||| ||||||||||||  ||| |||  | |||||||||||| ||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  1341626 ttgatttattgaatctcctccctcacttgttactttcatccacccaaagcataatttttaattagttaatcgaaaaacaattataatgattcatatctta 1341725  T
Q  310 aattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcattttcttcttcttccaggatacgtctatgtgaagtatc 408  Q
    || |||||||||| |||||| |||||||||||||||||||   | ||||||||||| |||||||| |||    |||| ||||||||| |||||||||||    
T  1341726 aaatgaatcatatgcatctctattgaattttcacaacacaatataacttttttacccttcatttt-ttc----tccaagatacgtctttgtgaagtatc 1341819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 232 - 348
Target Start/End: Complemental strand, 43471921 - 43471806
Alignment:
Q  232 tctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctcca 331  Q
    |||||| || |||||||||| ||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||| |    
T  43471921 tctctcgttactttcatccaacaaaaacataatttttaattggtta-tcgaaaaacagttatagtgattcatatcttaaattgaatcatatacatctcaa 43471823  T
Q  332 ttgaattttcacaacac 348  Q
    |||||||||||||||||    
T  43471822 ttgaattttcacaacac 43471806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 54 - 226
Target Start/End: Complemental strand, 47014676 - 47014501
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 149  Q
    ||||||||||||| |||||||| || ||||||| ||||||||||||||||||||||||| ||||    ||| |||   ||||||||||||| ||||||||    
T  47014676 aatactatataatcataaaagttataatttaca-aaaaataatacatgcgatcaaaataaaaaatgtaaagatttcgcataaatcatattcgattttcat 47014578  T
Q  150 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatc 226  Q
    ||||||||||   |||||||||||||||||||||||||||| || |||||||| ||||| | ||||||| |||||||    
T  47014577 tcatatgttaggatatcaacaaatgcatcaataaaagaactaaaaacaaagttcgtttaatgttgattggttgaatc 47014501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 212 - 374
Target Start/End: Complemental strand, 24121235 - 24121069
Alignment:
Q  212 ttgattgattgaatctcctatct--ctctttgctttcatccac-caaaaacataatttttaattggtt-aatcgaaaaacaattatactgattcatatct 307  Q
    ||||||||||||||||||| |||  ||| || | |||||| ||  ||||||| ||||||||||||||| || ||||||||||||| | ||||||||||||    
T  24121235 ttgattgattgaatctcctctctccctcgttacattcatcaacaaaaaaacacaatttttaattggttaaagcgaaaaacaattacagtgattcatatct 24121136  T
Q  308 taaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcatttt 374  Q
    |||||||||||| ||||| ||||||||| |||||||||||||  |||||||||||||| ||||||||    
T  24121135 taaattgaatcaaatacacctccattgatttttcacaacacattctcacttttttacccttcatttt 24121069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 54 - 226
Target Start/End: Complemental strand, 21854013 - 21853839
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcat 149  Q
    ||||||||||||| ||||||||||  |||||||||||| ||||||||  |||||||||| |||     ||||  |  |||||||||||||||||||||||    
T  21854013 aatactatataatcataaaagtcacgatttacagaaaa-taatacatatgatcaaaataaaaattgtgaagtgatc-tataaatcatattctattttcat 21853916  T
Q  150 tcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatc 226  Q
    ||||||||||   ||||||||||||||||||||||||||||| | ||||| ||| |||| | |||||||||||||||    
T  21853915 tcatatgttaggatatcaacaaatgcatcaataaaagaactctaaacaaattttatttaatgttgattgattgaatc 21853839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 189 - 347
Target Start/End: Complemental strand, 20619452 - 20619294
Alignment:
Q  189 ctcaatacaaagtttgtttactattgattgattgaatctc-ctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaac 287  Q
    ||||||||||| ||||| || || || || |||||||||| || ||||||| |   ||||||||| | ||| |||||||| || ||||| |||||||||     
T  20619452 ctcaatacaaattttgtctattagtggttaattgaatctctctctctctctctctcttcatccacaagaaatataatttt-aagtggttgatcgaaaaat 20619354  T
Q  288 aattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaaca 347  Q
    ||||||||| || ||||||| |||||||||||||||||| |||| |||||||||||||||    
T  20619353 aattatacttatgcatatctaaaattgaatcatatacatttccactgaattttcacaaca 20619294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 164 - 300
Target Start/End: Complemental strand, 8913685 - 8913548
Alignment:
Q  164 atcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctt--tgctttcatccaccaaaaacat 261  Q
    |||||||||||||||||||||| ||||||| ||||||||| |||  | ||||||||||||||   || ||||||||  | |  |  || ||||||| |||    
T  8913685 atcaacaaatgcatcaataaaaaaactcaaaacaaagtttattttatgttgattgattgaattgtctctctctcttcttaccctagtcaaccaaaa-cat 8913587  T
Q  262 aatttttaattggttaatcgaaaaacaattatactgatt 300  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  8913586 aatttttaattggttaatcgaaaaacaattatattgatt 8913548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 265 - 364
Target Start/End: Complemental strand, 29324196 - 29324097
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||| ||||| ||||| ||||||||||| |||| ||||||| ||||||||| ||||||||||  |||||| ||| ||||||  |||||||||||||||    
T  29324196 ttttaagtggttcatcgagaaacaattatattgatgcatatctaaaattgaatgatatacatctttattgaagttttacaacattgcctcacttttttac 29324097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 53530563 - 53530673
Alignment:
Q  117 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 216  Q
    ||||||||  |||||||||||||| |||||||||||||| ||||  ||| | || | | || | ||||||||||||| ||||| |||||||| |||||||    
T  53530563 aaagttttcgtataaatcatattcgattttcattcatatcttatgatattagcagaagtattattaaaagaactcaacacaaattttgtttaatattgat 53530662  T
Q  217 tgattgaatct 227  Q
    | |||||||||    
T  53530663 taattgaatct 53530673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 24121372 - 24121239
Alignment:
Q  55 atactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcatt 150  Q
    |||||||||||| ||||||||||  ||||||  |||||||||| |||  ||||||||||||||    || ||||   ||||| ||||||||||||| |||    
T  24121372 atactatataatcataaaagtcacaatttacc-aaaaataatatatgttatcaaaatataaaatataaaattttcgaataaaacatattctatttttatt 24121274  T
Q  151 catatgttatagtatcaacaaatgcatcaataaaa 185  Q
    ||||| |||  | ||||||||||||||||||||||    
T  24121273 catatattagggaatcaacaaatgcatcaataaaa 24121239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 374
Target Start/End: Original strand, 38489734 - 38489843
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||| ||||| ||||| ||||||||||| | || ||||||| ||||||||||||||||||||| | ||||| || ||||||     ||||||||||||    
T  38489734 ttttaagtggttcatcgagaaacaattatagttatgcatatctaaaattgaatcatatacatctctactgaatgtttacaacattatatcacttttttac 38489833  T
Q  365 cattcatttt 374  Q
     |||||||||    
T  38489834 tattcatttt 38489843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 305
Target Start/End: Complemental strand, 2111558 - 2111477
Alignment:
Q  224 atctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcg-aaaaacaattatactgattcatat 305  Q
    ||||||| |||||| || ||||  ||||| ||||||||||||||||||||||| |||| ||||||||||||| ||||||||||    
T  2111558 atctcctctctctcgttactttattccacaaaaaacataatttttaattggtt-atcgaaaaaacaattatagtgattcatat 2111477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 43471974 - 43471932
Alignment:
Q  117 aaagtttttatataaatcatattctattttcattcatatgtta 159  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  43471974 aaagttttcatataaatcatattctattttcattcatatgtta 43471932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 45472701 - 45472615
Alignment:
Q  278 atcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    ||||| |||||||| || |||| ||||||| ||||||||||||||||||||| ||||||| || ||||||  | || ||||||||||    
T  45472701 atcgagaaacaattctagtgatgcatatctaaaattgaatcatatacatctctattgaatgtttacaacattgtctaacttttttac 45472615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 27164037 - 27164110
Alignment:
Q  266 tttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattt 339  Q
    ||||| ||||| ||||| ||| ||||||| |||| ||||||| ||||||||||||||||||||| | |||||||    
T  27164037 tttaagtggttcatcgagaaataattatattgatgcatatctaaaattgaatcatatacatctctactgaattt 27164110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 16343210 - 16343146
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaa 118  Q
    ||||||||||||| |||||||||   ||||||| |||||||||||||| |||||||||| |||||    
T  16343210 aatactatataatcataaaagtcgcaatttacaaaaaaataatacatgtgatcaaaataaaaaaa 16343146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 365
Target Start/End: Original strand, 20369268 - 20369354
Alignment:
Q  278 atcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttacc 365  Q
    ||||| ||||||||||| |||| || |||| ||||||||||||||||||||| | | |||||||||||||  |  |||||||||||||    
T  20369268 atcgagaaacaattatattgatgca-atctaaaattgaatcatatacatctcaaattaattttcacaacattgtatcacttttttacc 20369354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 1341547 - 1341622
Alignment:
Q  88 aaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcatatgtta 159  Q
    |||||||||||| | |||||||||| ||||    ||||||| ||||||| |||||| |||||||||||||||||||    
T  1341547 aaaaataatacacgtgatcaaaataaaaaatgtaaagttttcatataaaacatattttattttcattcatatgtta 1341622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 327
Target Start/End: Complemental strand, 36504935 - 36504873
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatc 327  Q
    |||||||||||| ||||| |||||||| || |||| ||||||| |||||||| ||||||||||    
T  36504935 ttttaattggttcatcgagaaacaattctagtgatgcatatctaaaattgaaccatatacatc 36504873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 330
Target Start/End: Original strand, 20179041 - 20179106
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctcc 330  Q
    |||||| ||||| ||| | ||||||||  |||||| ||||||| ||||||||||||||||||||||    
T  20179041 ttttaagtggttcatcaagaaacaattcaactgatacatatctaaaattgaatcatatacatctcc 20179106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 40614935 - 40614830
Alignment:
Q  266 tttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttacc 365  Q
    ||||| ||||| ||||| |||||| | || ||||  |||||| |||||||| |||||||||||| | |||||||| |||| |  | ||||||||||||||    
T  40614935 tttaagtggttcatcgagaaacaactctaatgatgtatatctaaaattgaaccatatacatctctaatgaatttttacaatattgtctcacttttttacc 40614836  T
Q  366 attcat 371  Q
     |||||    
T  40614835 tttcat 40614830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 36172019 - 36172081
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa 117  Q
    ||||||||||||| |||||||||   ||||||| |||||||||||||| |||||||||| ||||    
T  36172019 aatactatataatcataaaagtcgcaatttaca-aaaaataatacatgtgatcaaaataaaaaa 36172081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 35296524 - 35296463
Alignment:
Q  278 atcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattt 339  Q
    ||||| ||||||||||||| || ||||||| |||||||||| |||| ||||| | |||||||    
T  35296524 atcgagaaacaattatacttatgcatatctaaaattgaatcgtatatatctctactgaattt 35296463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 35433547 - 35433483
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaaa 119  Q
    ||||||||||||| |||||| ||   ||||||| |||||||||||||| |||||||||| ||||||    
T  35433547 aatactatataatcataaaaatcgcgatttaca-aaaaataatacatgtgatcaaaataaaaaaaa 35433483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 5e-72; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 54 - 359
Target Start/End: Complemental strand, 7732545 - 7732241
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaaagt-----ttttatataaatcatattctattttca 148  Q
    ||||||||||||| ||||||||||  ||||| | ||||||||||  || | |||||||| ||||| ||     |||| ||||||||||  | ||||||||    
T  7732545 aatactatataatcataaaagtcacaatttata-aaaaataatatgtgtggtcaaaataaaaaaatgtaaattttttgtataaatcat--tatattttca 7732449  T
Q  149 ttcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcat 248  Q
    ||||||||||| | |||||| ||||||||||||||||||||| || || ||||||||||  | |||||||||| |||||||| |||||   | |||||||    
T  7732448 ttcatatgttagaatatcaataaatgcatcaataaaagaacttaaaacgaagtttgtttcatgttgattgattaaatctcctctctct---tactttcat 7732352  T
Q  249 ccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacac 348  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  7732351 ccaccaaaaacataatttttaattggctaatcgaaaaacagttatagtgattcatatcttaaattgaatcatatacatatccgttgaattttcacaacac 7732252  T
Q  349 agcctcacttt 359  Q
    | |||||||||    
T  7732251 atcctcacttt 7732241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 195 - 374
Target Start/End: Complemental strand, 12118496 - 12118319
Alignment:
Q  195 acaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattata 294  Q
    ||||| |||||||| ||||| |||| |||||||  ||| | || || | ||||||||||||||| ||||||||||||| ||||||||||||||| |||||    
T  12118496 acaaattttgtttaatattggttgactgaatcttatatttttcattaccttcatccaccaaaaatataatttttaattagttaatcgaaaaacagttata 12118397  T
Q  295 ctgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcatttt 374  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||   ||||||||||||| ||||||||    
T  12118396 ctgattcatatcttaaattgaatcatatacattttcattgaattttcacaacaca--ttcacttttttacccttcatttt 12118319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 232 - 362
Target Start/End: Complemental strand, 42990830 - 42990701
Alignment:
Q  232 tctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctcca 331  Q
    |||||| || ||||||||||||||||||||||||||||||| |||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  42990830 tctctcgttactttcatccaccaaaaacataatttttaattagtta-tcgaacaacaattatagtgattcatatcttaaattgaatcatatacatctcca 42990732  T
Q  332 ttgaattttcacaacacagcctcactttttt 362  Q
    ||||||||||||||||||| |||| ||||||    
T  42990731 ttgaattttcacaacacagtctcattttttt 42990701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 148 - 384
Target Start/End: Complemental strand, 41634610 - 41634387
Alignment:
Q  148 attcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttca 247  Q
    |||||||||||| | |||||||||||||||||||||||||||| || | |||||||||||| | |||||||||||||| |||| |||||| || | ||||    
T  41634610 attcatatgttagaatatcaacaaatgcatcaataaaagaactaaaaataaagtttgtttaatgttgattgattgaatgtcctctctctcgttaccttca 41634511  T
Q  248 tccac-caaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaac 346  Q
    ||||| |||||| ||| |||||||||  |||||||| |||              ||||||||||||||||| ||||||||||||||||||||||||||||    
T  41634510 tccacacaaaaaaatagtttttaattaattaatcgataaa--------------catatcttaaattgaatgatatacatctccattgaattttcacaac 41634425  T
Q  347 acagcctcacttttttaccattcattttcttcttcttc 384  Q
    |||  ||||| |||||||| |||||||| |||||||||    
T  41634424 acaatctcacctttttacccttcatttttttcttcttc 41634387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 118 - 360
Target Start/End: Original strand, 12848318 - 12848545
Alignment:
Q  118 aagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgatt 217  Q
    |||||||  ||||||| |||||||||||| |||||||| |||    |||||||||| |||||||||| |||||||| |||||||||||||| | || |||    
T  12848318 aagttttcgtataaattatattctatttttattcatatattaggacatcaacaaatacatcaataaaggaactcaaaacaaagtttgtttaatgttaatt 12848417  T
Q  218 gattgaatctcctatctctct--ttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattga 315  Q
    ||||||||    |||||||||  || |  ||||||| ||||||||||||||| ||||| |||||||||||||||||||| ||             |||||    
T  12848418 gattgaat----tatctctctcgttaccctcatccaacaaaaacataattttaaattgattaatcgaaaaacaattatattg-------------attga 12848500  T
Q  316 atcatatacatctccattgaattttcacaacacagcctcactttt 360  Q
    || ||||||||||||||||||||||||||||| || |||||||||    
T  12848501 attatatacatctccattgaattttcacaacaaagactcactttt 12848545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 374
Target Start/End: Complemental strand, 27972159 - 27971995
Alignment:
Q  212 ttgattgattgaatctcctatctctct--ttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatctta 309  Q
    ||||||||||||||||||| |||||||  || | || |||||||||||||||| |||| ||||||||| || ||||| |||| ||| |||||||||||||    
T  27972159 ttgattgattgaatctcctttctctctcgttacctttatccaccaaaaacatagttttgaattggttagtcaaaaaataattttaccgattcatatctta 27972060  T
Q  310 aattgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcatttt 374  Q
    ||||||||| |||||||||  ||| ||||||||||| |||  |||||||||| ||| ||| ||||    
T  27972059 aattgaatcttatacatctttattaaattttcacaatacaaactcactttttcacccttcttttt 27971995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 364
Target Start/End: Original strand, 2627883 - 2628069
Alignment:
Q  181 taaaagaactcaatacaaagtttgtttactattgattgattgaatctcct----atctctctttgctttcatccaccaaaaacataatttttaattggtt 276  Q
    ||||| ||||||| ||||| ||| |||| | |||||| |||||||| |||    |||||||||| | |||||||||  |||  |||||||| || |||||    
T  2627883 taaaataactcaacacaaattttatttaatgttgattaattgaatcacctctctatctctctttaccttcatccacagaaagtataatttt-aagtggtt 2627981  T
Q  277 aatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
     ||||| |||||||| || | || ||||||| ||||||||||||||||||||| | ||||| || ||||||| | |||||||||||||    
T  2627982 catcgataaacaattctaattatgcatatctaaaattgaatcatatacatctctactgaatgtttacaacactgtctcacttttttac 2628069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 347
Target Start/End: Complemental strand, 5836624 - 5836542
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaaca 347  Q
    |||||| ||||| ||||| |||||||||||| ||| ||||| | |||||||||||||||||||| || |||||||||||||||    
T  5836624 ttttaagtggttcatcgagaaacaattataccgatacatatataaaattgaatcatatacatcttcactgaattttcacaaca 5836542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 362
Target Start/End: Original strand, 16756032 - 16756181
Alignment:
Q  212 ttgattgattgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaa 311  Q
    |||||| |||||||||| | |||||  || | ||||||||| | ||  |||||||| || |||| |||||| |||||||| |||| || ||||||| |||    
T  16756032 ttgattaattgaatctcttctctcttgttaccttcatccacaagaattataatttt-aagtggtcaatcgataaacaattttactaatgcatatctaaaa 16756130  T
Q  312 ttgaatcatatacatctccattgaattttcacaacacagcctcactttttt 362  Q
    ||||||||||||||||||| ||||| |||| |||||  | |||||||||||    
T  16756131 ttgaatcatatacatctccgttgaactttcgcaacattgtctcactttttt 16756181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 364
Target Start/End: Complemental strand, 26565153 - 26564971
Alignment:
Q  181 taaaagaactcaatacaaagtttgtttactattgattgattgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatc 280  Q
    ||||||||||||| | ||| ||| | || |||||||| | |||||| |||  ||||| || | ||||||||| | ||  |||||||| || ||||| |||    
T  26565153 taaaagaactcaacataaattttatctaatattgattaactgaatcacctccctctccttaccttcatccacgataagtataatttt-aagtggtttatc 26565055  T
Q  281 gaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
     | ||||||||||| |||| ||||||| ||||||||||||||||||  | ||||||| || ||||||    |||||||||||||    
T  26565054 aagaaacaattatagtgatacatatctaaaattgaatcatatacattgctattgaatgtttacaacattatctcacttttttac 26564971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 39329670 - 39329596
Alignment:
Q  130 aaatcatattctattttcattcatatgttatag-tatcaacaaatgcatcaataaaagaactcaatacaaagtttg 204  Q
    |||| ||||||||||||||||||||| || ||| |||||||||||||||| ||||||||| |||| ||||||||||    
T  39329670 aaattatattctattttcattcatatatt-tagatatcaacaaatgcatcgataaaagaattcaaaacaaagtttg 39329596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 8802687 - 8802777
Alignment:
Q  127 tataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgatt 217  Q
    ||||||||||||| |||||| ||||||||||||   |||||| | | ||||||  |||||||||||| ||||| |||||||| ||||||||    
T  8802687 tataaatcatattatatttttattcatatgttaggatatcaatagaagcatcatcaaaagaactcaacacaaattttgtttaatattgatt 8802777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 312 - 374
Target Start/End: Complemental strand, 39329588 - 39329526
Alignment:
Q  312 ttgaatcatatacatctccattgaattttcacaacacagcctcacttttttaccattcatttt 374  Q
    ||||||| |||||||||||||| ||||||||| |||||  |||||||||||||| ||||||||    
T  39329588 ttgaatcttatacatctccatttaattttcacgacacaatctcacttttttacccttcatttt 39329526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 345
Target Start/End: Original strand, 26016613 - 26016672
Alignment:
Q  286 acaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaa 345  Q
    |||||| |||| ||||||||| |||| ||||||||||||||||| |||||||| ||||||    
T  26016613 acaattctactaattcatatcctaaactgaatcatatacatctctattgaattctcacaa 26016672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 41634766 - 41634663
Alignment:
Q  58 ctatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaa----aagtttttatataaatcatattctattttcattcat 153  Q
    ||||||||| ||||||||||| ||||| | || || |||||||| |||||||| | ||||    | |||||  |||||||||||||||||||||||||||    
T  41634766 ctatataatcataaaagtcataatttaaaaaagaa-aatacatgtgatcaaaacaaaaaatgtaatgttttcgtataaatcatattctattttcattcat 41634668  T
Q  154 atgtt 158  Q
    |||||    
T  41634667 atgtt 41634663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 13407268 - 13407326
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatata 323  Q
    |||||| ||||| ||||| ||||||||||||||||  |||||| |||||||||||||||    
T  13407268 ttttaactggttcatcgagaaacaattatactgatgtatatctaaaattgaatcatata 13407326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 363
Target Start/End: Original strand, 29231085 - 29231183
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcactttttta 363  Q
    |||||| || || ||||| |||||||| || |||| ||||||| ||||||| ||||||||||||  | |||||||| ||||||  | ||||||||||||    
T  29231085 ttttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgtctcactttttta 29231183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 36906852 - 36906776
Alignment:
Q  117 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaa 193  Q
    |||||||| ||||||| |||||| ||||||||||||| |||||   ||||||||||  ||| | |||||||||||||    
T  36906852 aaagttttcatataaagcatattatattttcattcatttgttaggatatcaacaaaaacattattaaaagaactcaa 36906776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 39700891 - 39700923
Alignment:
Q  127 tataaatcatattctattttcattcatatgtta 159  Q
    |||||||||||||||||||||||||||||||||    
T  39700891 tataaatcatattctattttcattcatatgtta 39700923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 342
Target Start/End: Complemental strand, 7612676 - 7612609
Alignment:
Q  275 ttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttca 342  Q
    |||||| | ||||||||||| |||||  ||||||||||||||||||||| ||||| | | ||||||||    
T  7612676 ttaatcaagaaacaattataatgatttctatcttaaattgaatcatataaatctctactaaattttca 7612609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 5836750 - 5836653
Alignment:
Q  133 tcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgattgattgaatctcct 230  Q
    ||||||| || ||||||||| ||||||   |||||||| | |||||| ||||||||||||| ||||| ||| | || |  ||||| ||||||||||||    
T  5836750 tcatattgtactttcattcagatgttaggatatcaacataagcatcattaaaagaactcaacacaaattttatctaatggtgattaattgaatctcct 5836653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 374
Target Start/End: Complemental strand, 7057215 - 7057107
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||| | ||| ||||| | |||||||||||||| ||||| | ||  ||||||||||||||||| | |||||||  ||||||  | ||||| |||||||    
T  7057215 ttttaagttgttcatcgagacacaattatactgatccatatgtaaatgtgaatcatatacatctctactgaatttctacaacattgtctcac-tttttac 7057117  T
Q  365 cattcatttt 374  Q
    | ||||||||    
T  7057116 ccttcatttt 7057107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 329
Target Start/End: Original strand, 31114025 - 31114070
Alignment:
Q  284 aaacaattatactgattcatatcttaaattgaatcatatacatctc 329  Q
    |||||||| |||| || ||||||| |||||||||||||||||||||    
T  31114025 aaacaattttactaatgcatatctaaaattgaatcatatacatctc 31114070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 32076545 - 32076650
Alignment:
Q  266 tttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttacc 365  Q
    ||||| |||||  |||| |||||||| || |||| ||||||| ||||||||  ||| ||||||| | |||| ||| ||||||  | ||||||||||||||    
T  32076545 tttaagtggtttgtcgagaaacaattttaatgatgcatatctaaaattgaactatacacatctctactgaaattttacaacattgtctcacttttttacc 32076644  T
Q  366 attcat 371  Q
     |||||    
T  32076645 cttcat 32076650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 117 - 326
Target Start/End: Complemental strand, 394425 - 394216
Alignment:
Q  117 aaagtttttatataaatcatattctattttcattcatatgttatagtatcaacaaatgcatcaataaaagaactcaatacaaagtttgtttactattgat 216  Q
    ||||||||  |||||||| |||| |||||| |||| |||||||| ||||||||||||| ||||||| |||||||||| ||||| |||||||| | |||||    
T  394425 aaagttttcgtataaatcgtattatattttaattcttatgttatggtatcaacaaatggatcaatacaagaactcaaaacaaaatttgtttaatgttgat 394326  T
Q  217 tgattgaatctcctatctctctttgctttcatccaccaaaaacataatttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaa 316  Q
    |||||||||||||| | |||  || ||||||||||| |||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||    
T  394325 tgattgaatctcctctttcttgttactttcatccactaaaaacatgatttttaattggttaatcgaaaaaaaattatagtgattcatatcttaaatcgaa 394226  T
Q  317 tcatatacat 326  Q
    ||||||||||    
T  394225 tcatatacat 394216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 53854 - 53789
Alignment:
Q  54 aatactatataattataaaagtcatcatttacagaaaaataatacatgcgatcaaaatataaaaaa 119  Q
    ||||||||||||| |||||||||   ||||||| |||||||||||||| |||||||||| ||||||    
T  53854 aatactatataatcataaaagtcgcaatttacaaaaaaataatacatgtgatcaaaataaaaaaaa 53789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 8005 - 7919
Alignment:
Q  278 atcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    ||||| |||||||| || |||| ||||||| ||||||| ||||||||||||  | |||||||| ||||||  | |||||||||||||    
T  8005 atcgagaaacaattctattgatgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgtctcacttttttac 7919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 364
Target Start/End: Complemental strand, 6275 - 6176
Alignment:
Q  265 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagcctcacttttttac 364  Q
    |||||| ||||| ||| |||||||||| || | || |||||||  |||||||||||||||||||| || |||| ||  |||||  | |||||||||||||    
T  6275 ttttaagtggttcatcaaaaaacaattctagttatgcatatctataattgaatcatatacatctctatcgaatgtttgcaacattgtctcacttttttac 6176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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