View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_28 (Length: 411)
Name: NF18007_low_28
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 12 - 393
Target Start/End: Complemental strand, 39335807 - 39335434
Alignment:
| Q |
12 |
tcatcagtaatggattttaacattgtattatatgatatttaatgtgatccatacaccaaaaaatgtcctgcaatacttggggatagagggcatacacaat |
111 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39335807 |
tcatcagtaatggattttaacattgtattat-------ttaatgtgatccatacaccaaaaa-tgtcctgcaatacttggggatagagggcatacacaat |
39335716 |
T |
|
| Q |
112 |
tcccaaagtcgatactcttaatgagcaagcttgttataaatagtataaataaataaaacaatacaacggactttagttcggaacgtaatgttaaaaatga |
211 |
Q |
| |
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||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39335715 |
tcccaaagtcgatactctttatgagcaagtttgttataaaaagtataaataaataaaacaatacaacggactttagttcggaacgtaatgttaaaaatga |
39335616 |
T |
|
| Q |
212 |
aaatgtctcatttccaaacttacttggcaaagcttgaagatgtagacaaatgaattgcgcttcataagtaaatattctcttgatgagcaagcttttaaca |
311 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39335615 |
aaatgtctcatttccaaacttacttggcaaagcttgaagatgtagacaaatgaattgcgcttcataagtaaatattctcttgatgagcaagcttttaaca |
39335516 |
T |
|
| Q |
312 |
gttcaatttttccaactccatatttctttgttgtcaaagcagctgggtggctcttagacttgtcaaattcagtaccaagttc |
393 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39335515 |
gttcaatttttccaactccatatttctttgttgtcaaagcagctgggtggctcttagacttgtcaaattcagtaccaagttc |
39335434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 36 - 393
Target Start/End: Complemental strand, 39347050 - 39346692
Alignment:
| Q |
36 |
gtattatatgatatttaatgtgatccatacaccaaaaaatgtcctgcaatacttggggatagagggcatacacaattcccaaagtcgata--ctcttaat |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||| || || ||| ||||||||||||||||||||||||||||||| |||||||| ||||| || |
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| T |
39347050 |
gtattatatgatatttaatgtgatccatacaccaaaaa-tgccccgcatgacttggggatagagggcatacacaattcccacagtcgatattctcttgat |
39346952 |
T |
|
| Q |
134 |
gagcaagcttgttataaatagtataaataaataaaacaatacaacggactttagttcggaacgtaatgttaaaaatgaaaatgtctcatttccaaactta |
233 |
Q |
| |
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|| |||||||| | || ||| | |||||||||||||||||||||| || || || || |||| |||||||||||||| |||| ||||||||||||||||| |
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| T |
39346951 |
gaacaagcttgctgtatatattttaaataaataaaacaatacaacagatttgaggtcagaacataatgttaaaaatggaaatttctcatttccaaactta |
39346852 |
T |
|
| Q |
234 |
cttggcaaagcttgaagatgtagacaaatgaattgcgcttcataagtaaatattctcttgatgagcaagcttttaacagttcaatttttccaactccata |
333 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
39346851 |
cttggcaaagctggaagatgtagacaaatgaattgcgcttcataagtaaatattctcttgatgaacaagcttttaacagttcaaattttccaactccata |
39346752 |
T |
|
| Q |
334 |
tttctttgttgtcaaagcagctgggtggctcttagacttgtcaaattcagtaccaagttc |
393 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39346751 |
tttctttgttgtcaaagcggctgggtggctcttagacttgtcaaattcagtaccaagttc |
39346692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 205 - 393
Target Start/End: Complemental strand, 39361431 - 39361243
Alignment:
| Q |
205 |
aaaatgaaaatgtctcatttccaaacttacttggcaaagcttgaagatgtagacaaatgaattgcgcttcataagtaaatattctcttgatgagcaagct |
304 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
39361431 |
aaaatgaaaatgtctaatttccaaacttacttggcaaagcttgaagatgtagacaaatgaattacgcttcataagtaaatattctcttgatgagcaagct |
39361332 |
T |
|
| Q |
305 |
tttaacagttcaatttttccaactccatatttctttgttgtcaaagcagctgggtggctcttagacttgtcaaattcagtaccaagttc |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39361331 |
tttaacagttcaatttttccaactccatatttctttgttgtcaaagcagctgggtggctcttagacttgtcaaattcagtaccaagttc |
39361243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 170 - 393
Target Start/End: Original strand, 39566948 - 39567170
Alignment:
| Q |
170 |
caatacaacggactttagttcggaacgtaatgttaaaaatgaaaatgtctcatttccaaacttacttggcaaagcttgaagatgtagacaaatgaattgc |
269 |
Q |
| |
|
||||||||| ||||| || ||||||| |||||| ||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
39566948 |
caatacaaccgacttgaggtcggaacaaaatgtttaaa-tcaaaatgtaaaatttccaaacttacttggcaaagcttgaagatgtagacaaatgcattgc |
39567046 |
T |
|
| Q |
270 |
gcttcataagtaaatattctcttgatgagcaagcttttaacagttcaatttttccaactccatatttctttgttgtcaaagcagctgggtggctcttaga |
369 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39567047 |
gtttcataagtaaatattctcttgatgagcaagctttatacagttcccattttcccactccatatttcttggttgtcaaagcagctgggtggctcttaga |
39567146 |
T |
|
| Q |
370 |
cttgtcaaattcagtaccaagttc |
393 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
39567147 |
cttgtcaaattcagtaccaagttc |
39567170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 205 - 393
Target Start/End: Original strand, 39540934 - 39541122
Alignment:
| Q |
205 |
aaaatgaaaatgtctcatttccaaacttacttggcaaagcttgaagatgtagacaaatgaattgcgcttcataagtaaatattctcttgatgagcaagct |
304 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||| ||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||| | |||||| |
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|
| T |
39540934 |
aaaatgaaaatgtccaaattccaaacctacttggaaaatcttgaagatatagacaaatgagttgcgcttcataagtaaatattctcttgataaacaagct |
39541033 |
T |
|
| Q |
305 |
tttaacagttcaatttttccaactccatatttctttgttgtcaaagcagctgggtggctcttagacttgtcaaattcagtaccaagttc |
393 |
Q |
| |
|
|| || ||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39541034 |
ttaaaaagttcccattttccaactccatatttcttggttgtcaaggcagctgggtggctcttagacttgtcaaattcagtaccaagttc |
39541122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 227 - 393
Target Start/End: Original strand, 39550212 - 39550378
Alignment:
| Q |
227 |
aaacttacttggcaaagcttgaagatgtagacaaatgaattgcgcttcataagtaaatattctcttgatgagcaagcttttaacagttcaatttttccaa |
326 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |||| | |||||||| |||| ||| |||||| | |
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|
| T |
39550212 |
aaacctacttggcaaattttgaagatgtagacgaatgaattgcgcttcataagtaagtattctcgtgataaacaagctttaaacaattcccattttccca |
39550311 |
T |
|
| Q |
327 |
ctccatatttctttgttgtcaaagcagctgggtggctcttagacttgtcaaattcagtaccaagttc |
393 |
Q |
| |
|
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
39550312 |
ctccatatttcttggttgtcaaggcagctggatggctcttagacttgtcaaattcagtaccaagttc |
39550378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 225 - 393
Target Start/End: Original strand, 39623793 - 39623961
Alignment:
| Q |
225 |
ccaaacttacttggcaaagcttgaagatgtagacaaatgaattgcgcttcataagtaaatattctcttgatgagcaagcttttaacagttcaatttttcc |
324 |
Q |
| |
|
|||||| ||||||| ||| |||||||| ||| | |||||||||||||||| |||||||| |||||||| |||||||||| || | ||| | ||||| |
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|
| T |
39623793 |
ccaaacctacttggagaagtttgaagatatagtgagatgaattgcgcttcatgagtaaatagtctcttgacaagcaagctttgaataattccaactttcc |
39623892 |
T |
|
| Q |
325 |
aactccatatttctttgttgtcaaagcagctgggtggctcttagacttgtcaaattcagtaccaagttc |
393 |
Q |
| |
|
|| |||||| || |||||||||||||||||||| ||||| |||||||||||||||| |||| ||||||| |
|
|
| T |
39623893 |
aattccatacttgtttgttgtcaaagcagctggatggcttttagacttgtcaaattgagtagcaagttc |
39623961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 227 - 393
Target Start/End: Original strand, 39576837 - 39577003
Alignment:
| Q |
227 |
aaacttacttggcaaagcttgaagatgtagacaaatgaattgcgcttcataagtaaatattctcttgatgagcaagcttttaacagttcaatttttccaa |
326 |
Q |
| |
|
|||| |||||||||||| ||||| |||| | | ||||||||||||||| |||||| |||||||||| |||||||||| |||| ||| |||||||| |
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|
| T |
39576837 |
aaacctacttggcaaagtttgaatttgtataaagttgaattgcgcttcatgagtaaaagttctcttgataagcaagctttgaacaattcccgttttccaa |
39576936 |
T |
|
| Q |
327 |
ctccatatttctttgttgtcaaagcagctgggtggctcttagacttgtcaaattcagtaccaagttc |
393 |
Q |
| |
|
|||||| || || || |||||||||||||| ||||| |||||||||||||||| |||| ||||||| |
|
|
| T |
39576937 |
ttccatacttgttggtcgtcaaagcagctggatggcttttagacttgtcaaattgagtaacaagttc |
39577003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 236 - 390
Target Start/End: Original strand, 39591056 - 39591210
Alignment:
| Q |
236 |
tggcaaagcttgaagatgtagacaaatgaattgcgcttcataagtaaatattctcttgatgagcaagcttttaacagttcaatttttccaactccatatt |
335 |
Q |
| |
|
|||||||| |||||||| || | ||| |||||||| ||||| ||||| |||||||||||| |||||||||| || | ||| ||||||| |||||| | |
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|
| T |
39591056 |
tggcaaagtttgaagatatataaaaacgaattgcgtttcatgagtaagtattctcttgataagcaagctttgaataattcccagtttccaattccatact |
39591155 |
T |
|
| Q |
336 |
tctttgttgtcaaagcagctgggtggctcttagacttgtcaaattcagtaccaag |
390 |
Q |
| |
|
| || ||||||||||| |||||||| || |||||||||||||||| |||| |||| |
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|
| T |
39591156 |
tgttggttgtcaaagctgctgggtgacttttagacttgtcaaattgagtaacaag |
39591210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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