View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_31 (Length: 400)
Name: NF18007_low_31
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 8318962 - 8318582
Alignment:
| Q |
1 |
tgtgagaatgtcaaatgagttaaaggcatgtggaacttgacaatttagcaatatacatgtgatccatgttttcccctnnnnnnnn-tgtgatccatgttt |
99 |
Q |
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| T |
8318962 |
tgtgagactgtcaaatgagttaaaggcatgtggaacttgacaatttagcaatatacatgtgatccatgttttcccctaaaaaaaaatgtgatccatgttt |
8318863 |
T |
|
| Q |
100 |
atagcttcacttcagaaactaaaatgactaatttatgaaagcacgagatggaacgacaatgcgcacatagataagggaaacataaatgtcgcaatatatg |
199 |
Q |
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| T |
8318862 |
atagcttcacttcacaaactaaaatgactaatttatgaaagcacgagatggaacgacaatgcgcacatagataagggaaacataaatgtcgcaatatatg |
8318763 |
T |
|
| Q |
200 |
agagaatcaagtccaacatggagcaccgatcagattcatcgacgagtaaatttacgcattacccgcaagtgtagccgattaaggcaagttacagttaaat |
299 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8318762 |
agataatcaagtccaacatggagcaccgatcagattcatcgacgagtaaatttacgcattacccgcgagtgtagccgattaaggcaagttacagttaaat |
8318663 |
T |
|
| Q |
300 |
tttgtaggccatgatattttgcctagcagtattagctttgcctatatacctattgcacatttcacttacgacacatttcac |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8318662 |
tttgtaggccatgatattttgcctagcagtattagctttgcctatatacctattgcacatttcacttatgacacatttcac |
8318582 |
T |
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