View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_34 (Length: 388)
Name: NF18007_low_34
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 42004138 - 42004508
Alignment:
| Q |
1 |
aattttgtgtgacaaaactaaaatgaatttaacgtaatggaagatcattgagagcataggaaagtacctgttgacttaatcgaatgtcggaagattctga |
100 |
Q |
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| T |
42004138 |
aattttgtgtgacaaaactaaaatgagtttaacataatggaagatcattgagagcataggaaagtacctgttgacttaatcgaatgtcggaagattctga |
42004237 |
T |
|
| Q |
101 |
gtcaagctgtacattgccagtgtggtcaagattttggcactcttccttgtctttcttcaactgctctggtcctagatgagcatatgccgaaagactaggc |
200 |
Q |
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| T |
42004238 |
gtcaagctgtacattgccagtgtggtcaagattttggcactcttccttgtctttcttcaactgctctggtcctagatgagcatatgccgaaagactaggc |
42004337 |
T |
|
| Q |
201 |
tggttcttttgttcgtcattttccctgtgtcttttcggagactggctttgaatgaaatcttcgaaccaagaaaatgtttcgggaagttgctatgaatcca |
300 |
Q |
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| T |
42004338 |
tggttcttttgttcgtcattttccctgtgtcttttcggagactggctttgaatgaaatcttcgaaccaagaaaatgtttcgggaagttgctgtgaatcca |
42004437 |
T |
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| Q |
301 |
atagattcagcggcaggtcaatgttatccatctcttcacagtcatcctgactattaagtagccattcttct |
371 |
Q |
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| T |
42004438 |
atagattcagcggcaggtcaatgttatccatctcttcacagtcatcctcactattaagtagccattcttct |
42004508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 126 - 328
Target Start/End: Original strand, 42013102 - 42013304
Alignment:
| Q |
126 |
tcaagattttggcactcttccttgtctttcttcaactgctctggtcctagatgagcatatgccgaaagactaggctggttcttttgttcgtcattttccc |
225 |
Q |
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| T |
42013102 |
tcaagattttgacactcttcaatatctttcttcaattgctctgctcctaaatgagcatatacggaaagactaggtcgttccatttgctctccgctttccc |
42013201 |
T |
|
| Q |
226 |
tgtgtcttttcggagactggctttgaatgaaatcttcgaaccaagaaaatgtttcgggaagttgctatgaatccaatagattcagcggcaggtcaatgtt |
325 |
Q |
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| T |
42013202 |
catcccttttcggagactggctctgaaagaaatctgcgaacaaggaaagtccttccgcaagttgctgtgaatccaataaattctgcgacaggtcaaagtt |
42013301 |
T |
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| Q |
326 |
atc |
328 |
Q |
| |
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||| |
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| T |
42013302 |
atc |
42013304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 42012922 - 42013016
Alignment:
| Q |
19 |
taaaatgaatttaacgtaatggaagatcattgagagcataggaaagtacctgttgacttaatcgaatgtcggaagattctgagtcaagctgtacatt |
115 |
Q |
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|||||||||||||| ||| |||||| ||||||||| ||||||| |||| |||||||||||||||| ||||||| || ||||||||||| |||||| |
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| T |
42012922 |
taaaatgaatttaatgtattggaaggtcattgagaaaataggaa--taccagttgacttaatcgaatatcggaaggttgtgagtcaagctctacatt |
42013016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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