View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_35 (Length: 383)
Name: NF18007_low_35
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_35 |
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| [»] scaffold0159 (1 HSPs) |
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Alignment Details
Target: scaffold0159 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 25876 - 26232
Alignment:
| Q |
1 |
actaatcgattcgtttaacagtttcaaaattcaagtacatggaaaatctaagtgttatactgaaattggaactgagttaggttattggttctaggacagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25876 |
actaatcgattcgtttaacagtttcaaaattcaagtacatggaaaatctaagtgttttactgaaattggaactgagttaggttattggttctaggacagt |
25975 |
T |
|
| Q |
101 |
ccgacgatgcgggtagcaaattaacaggacgagcgagaacttaaacagaaattattcataacccttgatgagtaattgaacttatactggtctgaattgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25976 |
ccgacgatgcgggtagcaaattaacaggacgagcgagaacttaaacag----tattcataacccttgatgagtaattgaacttatactggtctgaattgg |
26071 |
T |
|
| Q |
201 |
tcatcaaccatgtaactgaaaggctaacgacatttggtataaatac-ttaagaataacgctctataatatcagtttgacttcctgatatcaaggaattag |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26072 |
tcatcaaccatgtaactgaaaggctaacgacatttggtataaatactttaagaataacgctctataatatcagtttgacttcctgatatca-------ag |
26164 |
T |
|
| Q |
300 |
gaaggtttgcatctcaaggaattcttacattaacgaacataactgatgggtctcaaggcactcgaaga |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26165 |
gaaggtttgcatctcaaggaattcttacattaacgaacataactgatgggtctcaaggcactggaaga |
26232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 5780544 - 5780900
Alignment:
| Q |
1 |
actaatcgattcgtttaacagtttcaaaattcaagtacatggaaaatctaagtgttatactgaaattggaactgagttaggttattggttctaggacagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5780544 |
actaatcgattcgtttaacagtttcaaaattcaagtacatggaaaatctaagtgttttactgaaattggaactgagttaggttattggttctaggacagt |
5780643 |
T |
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| Q |
101 |
ccgacgatgcgggtagcaaattaacaggacgagcgagaacttaaacagaaattattcataacccttgatgagtaattgaacttatactggtctgaattgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5780644 |
ccgacgatgcgggtagcaaattaacaggacgagcgagaacttaaacag----tattcataacccttgatgagtaattgaacttatactggtctgaattgg |
5780739 |
T |
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| Q |
201 |
tcatcaaccatgtaactgaaaggctaacgacatttggtataaatac-ttaagaataacgctctataatatcagtttgacttcctgatatcaaggaattag |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5780740 |
tcatcaaccatgtaactgaaaggctaacgacatttggtataaatactttaagaataacgctctataatatcagtttgacttcctgatatca-------ag |
5780832 |
T |
|
| Q |
300 |
gaaggtttgcatctcaaggaattcttacattaacgaacataactgatgggtctcaaggcactcgaaga |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5780833 |
gaaggtttgcatctcaaggaattcttacattaacgaacataactgatgggtctcaaggcactggaaga |
5780900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 5794038 - 5794407
Alignment:
| Q |
1 |
actaatcgattcgtttaacagtttcaaaattcaagtacatggaaaatctaagtgttatactgaaattggaactgagttaggttattggttctaggacagt |
100 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5794038 |
actaatcaattggtttaacagtttcaaaattcaagtacatggaaaatcaaagtgttttactaaaattggaactgagttaggttattggttctaggacagt |
5794137 |
T |
|
| Q |
101 |
ccgacgatgcggg-tagcaaattaacaggacgagcgagaacttaaacagaaattattcataacccttgatgagtaattgaacttatactggtctgaattg |
199 |
Q |
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| |||||||| || |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5794138 |
cggacgatgcaggctagcaaattaacag-acgagtgagaacttaaacagaaattactcataacccttgacgagtaattgaacttatactggtctgaattg |
5794236 |
T |
|
| Q |
200 |
gtcatcaaccatgtaactgaaaggctaacgacatttggtataaatacttaagaataacgctctataatatcagtttgacttcctgatatcaaggaattag |
299 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| || || ||| |
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| T |
5794237 |
gtcatcaaccatgtaactgaaaggctaaagacatttggtataaatacttaaaaataacactctataatatcagtttgacttactgatatcgagaaaatag |
5794336 |
T |
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| Q |
300 |
gaaggtttgcatctcaaggaattcttacattaacgaacataactgatgggtctcaaggcactcgaagagaa |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5794337 |
gaaggtttgcatctcaaggaattcttacattaacgaacgtaactgatgggtctcaaggcactcgaagagaa |
5794407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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