View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_36 (Length: 379)
Name: NF18007_low_36
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 153 - 363
Target Start/End: Original strand, 2708531 - 2708741
Alignment:
| Q |
153 |
aacaatatacaaacatttgcattagtgctaaacattaactattgtctgttcacacaatcaacagaatatataccttgtctgcactatgcttcaacttgta |
252 |
Q |
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| T |
2708531 |
aacaatatacaaacatttgcattagtgcttaacattaactattgtctgttcacacaatcaacagaatatataccttgtctgcactatgcttcaacttgta |
2708630 |
T |
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| Q |
253 |
tattgataggctacgagacaaacccaacctcataggaggcatatcttgaacggcaagatcagttacaagttctgtcaactgatatcgaatacctcgcatt |
352 |
Q |
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| T |
2708631 |
tattgataggctaccagacaaacccaacctcatcggaggcatatcttgaacggcgagatcagttacaagttctgtcaactgatatcgaatacctcgcatt |
2708730 |
T |
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| Q |
353 |
agctccataac |
363 |
Q |
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| T |
2708731 |
agctccataac |
2708741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 224 - 363
Target Start/End: Original strand, 2702663 - 2702802
Alignment:
| Q |
224 |
accttgtctgcactatgcttcaacttgtatattgataggctacgagacaaacccaacctcataggaggcatatcttgaacggcaagatcagttacaagtt |
323 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||| ||||||||||||| ||||| |||| ||| |||||||| || || |||||| |||| |
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| T |
2702663 |
accttgtctgcactgaacttcaacttgtatcttgataggctatgagacaaacccaagctcatcggagccatgtcttgaacagcgaggccagttatgagtt |
2702762 |
T |
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| Q |
324 |
ctgtcaactgatatcgaatacctcgcattagctccataac |
363 |
Q |
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| T |
2702763 |
ccgtcaactgatatcgaatacctcgcattatctccataac |
2702802 |
T |
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