View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18007_low_40 (Length: 369)

Name: NF18007_low_40
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18007_low_40
NF18007_low_40
[»] chr1 (1 HSPs)
chr1 (8-309)||(50234455-50234756)
[»] chr3 (6 HSPs)
chr3 (21-309)||(46954089-46954377)
chr3 (32-304)||(26701591-26701863)
chr3 (157-225)||(39464274-39464342)
chr3 (157-220)||(21789267-21789330)
chr3 (32-73)||(37152345-37152386)
chr3 (21-73)||(21789131-21789183)
[»] chr7 (3 HSPs)
chr7 (106-309)||(1448284-1448487)
chr7 (32-304)||(34361411-34361683)
chr7 (49-107)||(1447049-1447107)
[»] chr4 (1 HSPs)
chr4 (32-309)||(11052738-11053015)
[»] chr6 (1 HSPs)
chr6 (21-128)||(2961128-2961235)
[»] chr5 (1 HSPs)
chr5 (157-225)||(31468850-31468918)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 309
Target Start/End: Complemental strand, 50234756 - 50234455
Alignment:
Q  8 tgatatgaagctggaggatttggtttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgtttta 107  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50234756 tgatatggagcttgaggatttggtttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgtttta 50234657  T
Q  108 attcaagatataagggatctccttgttacgcacaatttcactgtccactattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggag 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50234656 attcaagatataagggatctccttgttacgcacaatttcactgtccaccattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggag 50234557  T
Q  208 cttcttctaatgaggagtacttcatccacccatcccctcctcaagaccttcctgttttattaaggaatgatgcagtaggaacttattttcctagagctta 307  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50234556 cttcttctaatgagtagtacctcatccacccatcccctcctcaagaccttcctgttttattaaggaatgatgcagtaggaacttattttcgtagagctta 50234457  T
Q  308 gg 309  Q
    ||    
T  50234456 gg 50234455  T

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Target: chr3 (Bit Score: 173; Significance: 6e-93; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 21 - 309
Target Start/End: Complemental strand, 46954377 - 46954089
Alignment:
Q  21 gaggatttggtttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgttttaattcaagatataa 120  Q
    ||||| ||||||||||||||||  ||||||||||||||||| |||||||| |||||||| ||||  |||||  ||||||||||||||||||||||||| |    
T  46954377 gaggaattggtttgctactcggtttcgcttctctcaattaatctcattacgggtcaagcttcaaagtatcatgcctatgccgttttaattcaagatatta 46954278  T
Q  121 gggatctccttgttacgcacaatttcactgtccactattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaatga 220  Q
     ||| ||| | ||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||    
T  46954277 aggacctcttagtttcgcacaatttcactgtccagcattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattaggagcttcgtcaaatga 46954178  T
Q  221 ggagtacttcatccacccatcccctcctcaagaccttcctgttttattaaggaatgatgcagtaggaacttattttcctagagcttagg 309  Q
     |||||| | |||||| |||||||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||||||    
T  46954177 tgagtaccttatccactcatcccctcctcaagaccttcctgatttactaaggaatgatggagtaggaatttattttcctagagcttagg 46954089  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 32 - 304
Target Start/End: Complemental strand, 26701863 - 26701591
Alignment:
Q  32 ttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgttttaattcaagatataagggatctcctt 131  Q
    ||||||||| ||||| |||||||| || || ||||||||||||||||| ||||  || ||  ||||||| ||| |||||||||| |||| |||  || |     
T  26701863 ttgctactctgactctcttctctccatcaatctcattacaggtcaagcttcaaagtaccatgcctatgcagttctaattcaagacataaaggacatctta 26701764  T
Q  132 gttacgcacaatttcactgtccactattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaatgaggagtacttca 231  Q
        ||||||||||| || ||||  |||||||| | |||||||||||||| |||||||||||||||||||| | |||||| ||||| || | || ||| |    
T  26701763 tcctcgcacaatttctctatccaacattgcctcagagaaggaaaccaatgtgctgatttcatggcaaaattcgaagcttcctctaacgatgtgtgcttaa 26701664  T
Q  232 tccacccatcccctcctcaagaccttcctgttttattaaggaatgatgcagtaggaacttattttcctagagc 304  Q
    |||| ||||| ||||||||||||||||  |||||| | |||||||||||  |||||||||  |||||||||||    
T  26701663 tccatccatctcctcctcaagaccttcacgttttacttaggaatgatgctataggaacttgctttcctagagc 26701591  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 39464274 - 39464342
Alignment:
Q  157 attgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaatgaggagt 225  Q
    |||| ||||||||||||||||||||||| |||| | |||| || ||||||||||| || ||||| ||||    
T  39464274 attgtctccgtgaaggaaaccaatgcgcggattacttggctaagttgggagcttcatcaaatgaagagt 39464342  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 21789267 - 21789330
Alignment:
Q  157 attgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaatga 220  Q
    |||| ||||||||||||||||||||||| |||| | |||| || ||||||||||| || |||||    
T  21789267 attgtctccgtgaaggaaaccaatgcgcggattacttggccaagttgggagcttcatcaaatga 21789330  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 37152345 - 37152386
Alignment:
Q  32 ttgctactcggactcgcttctctcaattaacctcattacagg 73  Q
    ||||||||||||||| |||||||| || ||||||||||||||    
T  37152345 ttgctactcggactcccttctctccatcaacctcattacagg 37152386  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 21789131 - 21789183
Alignment:
Q  21 gaggatttggtttgctactcggactcgcttctctcaattaacctcattacagg 73  Q
    ||||| |||| |||||||||||||||||||||||| || || || ||||||||    
T  21789131 gaggagttggcttgctactcggactcgcttctctccatcaatcttattacagg 21789183  T

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Target: chr7 (Bit Score: 168; Significance: 6e-90; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 106 - 309
Target Start/End: Original strand, 1448284 - 1448487
Alignment:
Q  106 taattcaagatataagggatctccttgttacgcacaatttcactgtccactattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattggg 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| |||||||||||||||||||||    
T  1448284 taattcaagatataagggatctccttgttacgcacaatttcactgtccaccattacctctgtgaaggaaaccaatgcgttgatttcatggcaaaattggg 1448383  T
Q  206 agcttcttctaatgaggagtacttcatccacccatcccctcctcaagaccttcctgttttattaaggaatgatgcagtaggaacttattttcctagagct 305  Q
    |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  1448384 agcttcgtctaatgatgagtacctcatccacccatcccctcctcaagaccttcctgttttactaaggaatgatgcagtatgaacttattttcctagagct 1448483  T
Q  306 tagg 309  Q
    ||||    
T  1448484 tagg 1448487  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 304
Target Start/End: Original strand, 34361411 - 34361683
Alignment:
Q  32 ttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgttttaattcaagatataagggatctcctt 131  Q
    ||||||||| ||||| |||||||| || || ||||||||||||||||| ||||  || ||  ||||||| ||| |||| ||||| |||| |||    |||    
T  34361411 ttgctactctgactctcttctctccatcaatctcattacaggtcaagcctcaaagtaccatgcctatgcagttctaatccaagacataaagga----ctt 34361506  T
Q  132 gtta----cgcacaatttcactgtccactattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaatgaggagtac 227  Q
     |||    ||||||||||| || ||||  |||||||| | |||||||||||||| |||||||||||||||||||| |||||||| |||||  | |  | |    
T  34361507 attatcctcgcacaatttctctatccaacattgcctcagggaaggaaaccaatgtgctgatttcatggcaaaattcggagcttcctctaacaatgtttgc 34361606  T
Q  228 ttcatccacccatcccctcctcaagaccttcctgttttattaaggaatgatgcagtaggaacttattttcctagagc 304  Q
    || ||||| ||||| || |||||||||||||  || ||| |  |||| |||||  |||| |||| ||||||||||||    
T  34361607 tttatccatccatctccgcctcaagaccttcacgtcttactccggaacgatgctatagggacttgttttcctagagc 34361683  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 1447049 - 1447107
Alignment:
Q  49 ttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgtttta 107  Q
    ||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  1447049 ttctctcaattaacctcgttacgggtcaagcatcaatatatcattcctatgccgtttta 1447107  T

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Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 32 - 309
Target Start/End: Original strand, 11052738 - 11053015
Alignment:
Q  32 ttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgttttaattcaagatataagggatctcctt 131  Q
    ||||||||| ||||| |||||||| || || ||||||||||||||||| ||||  || ||  ||||||||||||||||||||||||||| ||| ||| |     
T  11052738 ttgctactctgactctcttctctccatcaatctcattacaggtcaagcttcaaagtaccatgcctatgccgttttaattcaagatataaaggacctctta 11052837  T
Q  132 gttacgcacaatttcactgtccactattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaatgaggagtacttca 231  Q
      | ||||||||||| || ||||  |||||||| | |||||||| |||||||||||||||||||||||||| |||||||||||||| || | || ||| |    
T  11052838 tcttcgcacaatttctctatccaacattgcctcagagaaggaaaacaatgcgctgatttcatggcaaaattaggagcttcttctaacgatgtgtgcttaa 11052937  T
Q  232 tccacccatcccctcctcaagaccttcctgttttattaaggaatgatgcagtaggaacttattttcctagagcttagg 309  Q
    ||||| |||| ||||||||||||||||| | |||| | |||||||||||  |||||||||  ||||||||||| ||||    
T  11052938 tccactcatctcctcctcaagaccttcccgatttacttaggaatgatgctataggaacttgctttcctagagcctagg 11053015  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 2961128 - 2961235
Alignment:
Q  21 gaggatttggtttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgttttaattcaagatataa 120  Q
    ||||| |||| |||||||||||||||||||||||| || || || ||||||||   ||| ||||  |||||  ||||||| || ||||| ||||||||||    
T  2961128 gaggagttggcttgctactcggactcgcttctctccatcaatcttattacaggaagagcttcaagctatcatgcctatgctgtcttaatacaagatataa 2961227  T
Q  121 gggatctc 128  Q
     |||||||    
T  2961228 aggatctc 2961235  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 31468850 - 31468918
Alignment:
Q  157 attgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaatgaggagt 225  Q
    |||| |||||||||||||| ||||| || |||| | ||||||||||||||||||| || ||||| ||||    
T  31468850 attgtctccgtgaaggaaatcaatgtgcggattacttggcaaaattgggagcttcatcgaatgaagagt 31468918  T

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