View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_44 (Length: 348)
Name: NF18007_low_44
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_44 |
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| [»] scaffold0562 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 3877874 - 3877551
Alignment:
| Q |
16 |
cattcacaaatcttgaaattagaacacatcaaacaaaaattggttattgaattttctaccatgacaactttcataaaaataaaataatgttattgaattt |
115 |
Q |
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| T |
3877874 |
cattcacaaatcttgaaattagaacacatcaaacaaaa-ttggttattgaattttctaccatgacaactttcataaaaataaaataatgttattgaattt |
3877776 |
T |
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| Q |
116 |
tcttcctattgatggaaatccttatagcctgtctttttggaagagtataaatcttcctattacatcccacaaatgtaatttctttcactgaatctcattt |
215 |
Q |
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| T |
3877775 |
tcttcctattgatggaaatccttatcgcttgtctttttggaagagtataaatcttcctattacctcccacaaatgtaattactttcactgaatctcattt |
3877676 |
T |
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| Q |
216 |
taaaaatcttttatattgggggtgggggaaaaaagctctcaaaattcattggtttcattgggacaaagtttacgcagttaaagagaaaggtcgtttaagg |
315 |
Q |
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| T |
3877675 |
taaaaatcttttatattgggagt-ggggaaaaaagctctcaaaattcattggtttcattgggacaaagtttacgaaggtaaagagaagggccgtttaagg |
3877577 |
T |
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| Q |
316 |
gtgcggaggcttaggaagtataattt |
341 |
Q |
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| T |
3877576 |
gcgcggaggcttaggaaatttaattt |
3877551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0562 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0562
Description:
Target: scaffold0562; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 8710 - 8440
Alignment:
| Q |
16 |
cattcacaaatcttgaaattagaacacatcaaacaaaaattggttattgaattttctaccatgacaactttcataaaaataaaataatgttattgaattt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8710 |
cattcacaaatcttgaaattagaacacatcaaacaaaa-ttggttattgaattttctaccatgacaactttcataaaa-taaaataatgttattgaattt |
8613 |
T |
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| Q |
116 |
tcttcctattgatggaaatccttatagcctgtctttttggaagagtataaatcttcctattacatcccacaaatgtaatttctttcactgaatctcattt |
215 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
8612 |
tcttcctattgatggaaatccttatcgcttgtctttttggaagagtataaatcttcctattacctcccacaaatgtaattactttcactgaatctcattt |
8513 |
T |
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| Q |
216 |
taaaaat-ctttta-tattggg--ggtgggggaaaaaag---ctctcaaaa-ttcattggtttc-attgggac |
279 |
Q |
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| T |
8512 |
aaaaattacttttattattgggtaggtggggaaaaaaaggaactctcaaaatttcattggtttctattgggac |
8440 |
T |
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