View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_45 (Length: 347)
Name: NF18007_low_45
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 39 - 331
Target Start/End: Complemental strand, 3111749 - 3111458
Alignment:
| Q |
39 |
cacagagtctaatagttcaaatgcattagatttggagagagtttgaacatcttcttcagctacaattgagatattttcgcttcctagacactcagataat |
138 |
Q |
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| T |
3111749 |
cacagagtctaatagttcagatgcattagatttggagagagtttgaacatcttcttcagctacaattgagatattttcgcttcctagacactcagataat |
3111650 |
T |
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| Q |
139 |
atccagctgacaactgcttggacactccaatctattcaaacagcacaatgaagttttatgtacaaaactcaaaaaagcttcaaccatcatacaaccatag |
238 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3111649 |
atccagctcacaactgcttggacactccaatctattcaaacagcacaatgaagttttatgtacaaaactcaaaatagcttcaaccatcatacaaccatag |
3111550 |
T |
|
| Q |
239 |
tatagaaatataaaacaggacacagcaaaaagttaatcatagatctttgctcaagttaaagtaacttatatgtggtcatacattggaacttta |
331 |
Q |
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| T |
3111549 |
tatagaaatataaaacaggacacagcaaaaatttaatcatagatctttgctcaagttaaagtaacttatatgtggtcata-attggaacttta |
3111458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 19058531 - 19058639
Alignment:
| Q |
43 |
gagtctaatagttcaaatgcattagatttggagagagtttgaacatcttcttcagctacaattgagatattttcgcttcctagacactcagataatatcc |
142 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||||| |
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| T |
19058531 |
gagtctaatagttcagatgcattagatttggagagagtttgaacattttcttcagctatagttgtgatattttcgcttcctagacactcagataatatcc |
19058630 |
T |
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| Q |
143 |
agctgacaa |
151 |
Q |
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| T |
19058631 |
agctgacaa |
19058639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 50803364 - 50803267
Alignment:
| Q |
54 |
ttcaaatgcattagatttggagagagtttgaacatcttcttcagctacaattgagatattttcgcttcctagacactcagataatatccagctgacaa |
151 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50803364 |
ttcagatgcattagatttggagagagtttgaacattttcttcagctacagttgtgatattttcgcttcctagacactcagataatatctagctgacaa |
50803267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 50872513 - 50872610
Alignment:
| Q |
54 |
ttcaaatgcattagatttggagagagtttgaacatcttcttcagctacaattgagatattttcgcttcctagacactcagataatatccagctgacaa |
151 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50872513 |
ttcagatgcattagatttggagagagtttgaacattttcttcagctacagttgtgatattttcgcttcctagacactcagataatatctagctgacaa |
50872610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 35894289 - 35894410
Alignment:
| Q |
52 |
agttcaaatgcattagatttggagagagtttgaacatcttcttcagctacaattgagatattttcgcttcctagacactcagataatatccagctgacaa |
151 |
Q |
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|||||| ||||||||| ||||||||||| ||||| || |||||||||| ||| |||||||| || | |||| ||| ||||||||||||||||| |||| |
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| T |
35894289 |
agttcagatgcattagtgttggagagagtctgaacctcctcttcagctagaatagagatattgtcaccccctaaacattcagataatatccagctcacaa |
35894388 |
T |
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| Q |
152 |
ctgcttggacactccaatctat |
173 |
Q |
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||||| |||||||||| |||| |
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| T |
35894389 |
ttgctttgacactccaacctat |
35894410 |
T |
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