View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18007_low_46 (Length: 346)
Name: NF18007_low_46
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_46 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 33903851 - 33903522
Alignment:
| Q |
1 |
taaatcaaaacagaaagaggaacataacatacatcttttctgtaaatagctccttgaaagtaaagcaaagttttcctgctatcaaaggtagattgatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33903851 |
taaatcaaaacagaaagaggaacataacatacatcttttctgtaaatagctccttgaaagtaaagcaaagttttcctgctatcaaaggtagattgatcat |
33903752 |
T |
|
| Q |
101 |
caacataagaagcaataacatgcttatacggcgcaatcacatctttatcaacatttgctatattaggaggatatctcccaaaatcagacaatataaaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33903751 |
caacataagaagcaataacatgcttatacggcgcaatcacatctttatcaacatttgctatattaggaggatatctcccaaaatcagacaatataaaagt |
33903652 |
T |
|
| Q |
201 |
tgcaggccaaagtttcattctagcatccaacatactattaggatgatgagccaagatcaaatgatcccttccacctgacctcttccattcctcttgactc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33903651 |
tgcaggccaaagtttcattctagcatccaacatactattaggatgatgagccaagatcaaatgatcccttccacctgacctcttccattcctcttgattc |
33903552 |
T |
|
| Q |
301 |
atcaaatacctcaccaacttctcttgcaac |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
33903551 |
atcaaatacctcaccaacttctcttgcaac |
33903522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 27 - 326
Target Start/End: Original strand, 9327340 - 9327639
Alignment:
| Q |
27 |
acatacatcttttctgtaaatagctccttgaaagtaaagcaaagttttcctgctatcaaaggtagattgatcatcaacataagaagcaataacatgctta |
126 |
Q |
| |
|
||||||||||||||| || || |||||||| || || | ||| ||| | | |||||||||| | || | ||||| |||||||||| || | ||||||| |
|
|
| T |
9327340 |
acatacatcttttctatagattgctccttggaaatacaacaatgttgtacggctatcaaagttggaattatcattgacataagaagtgattaaatgctta |
9327439 |
T |
|
| Q |
127 |
tacggcgcaatcacatctttatcaacatttgctatattaggaggatatctcccaaaatcagacaatataaaagttgcaggccaaagtttcattctagcat |
226 |
Q |
| |
|
|| || ||||||||||| || |||||||| |||||| | | ||||||||| |||||||| || | |||||| || || ||||| | ||||||||| |||| |
|
|
| T |
9327440 |
taaggtgcaatcacatccttttcaacattagctatacttgaaggatatcttccaaaatctgagagtataaatgtagctggccacaatttcattcttgcat |
9327539 |
T |
|
| Q |
227 |
ccaacatactattaggatgatgagccaagatcaaatgatcccttccacctgacctcttccattcctcttgactcatcaaatacctcaccaacttctcttg |
326 |
Q |
| |
|
|||||||||||||||||||||| || | |||| |||||| |||| |||||| ||||||||||||||| ||| |||| ||||||||| |||||| |
|
|
| T |
9327540 |
ccaacatactattaggatgatgtgctataatcacatgatcttttccctttgaccttttccattcctcttgagatgtcacatacttcaccaactcctcttg |
9327639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University