View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_47 (Length: 328)
Name: NF18007_low_47
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_47 |
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| [»] scaffold0632 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 956971 - 957271
Alignment:
| Q |
12 |
catcatcacggc-gcttacctccgctatacatcagccaccatctccaacttgaggctcttcttcactcctgtttcaaggtcttttttcgtttattcatga |
110 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
956971 |
catcatcacggccgcttacctccgcta--catcagccaccatctccaacttgaggctcttcttcactcctgtttcaaggtcttttttcgtttattcatga |
957068 |
T |
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| Q |
111 |
gcttaatttcactacaacttacaaaaaatttgatcagttatctagtttatatcttcatgaaaatggactagttctgttaataataaacattctatatatc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
957069 |
gcttaatttcactacaacttacaaaaaatttgatcagttatctagtttatatcttcatgaaaatggactagttctgttaataataaacattctatatatc |
957168 |
T |
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| Q |
211 |
ggctgcttccagggttgatttatctttatccattgttaattagggtatgttttctcaccctgtagttaagattgtatatcacttctgattctgcggaaat |
310 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
957169 |
ggctgcttccagggttgaattatctttatccattgttaattagggtctgttttctcaccctgtagttaagattgtatatcacttctgattctgcagaaat |
957268 |
T |
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| Q |
311 |
gtc |
313 |
Q |
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||| |
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| T |
957269 |
gtc |
957271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0632 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: scaffold0632
Description:
Target: scaffold0632; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 38 - 269
Target Start/End: Original strand, 2524 - 2760
Alignment:
| Q |
38 |
tacatcagccaccatctccaacttgaggctcttcttcactcctgtttcaaggtctttttt-cgtttatt----catgagcttaatttcactacaacttac |
132 |
Q |
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| T |
2524 |
tacatcagccaccatttccaacttgaggatcttcttcactcatgtttcaaggtctttttttcatttattaattcatgagcttaatttcactacaacttac |
2623 |
T |
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| Q |
133 |
aaaaaatttgatcagttatctagtttatatcttcatgaaaatggactagttctgttaataataaacattctatatatcggctgcttccagggttgattta |
232 |
Q |
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| T |
2624 |
aaaacgtttgatcagttatatagtatatatcttcatgaaaatggactagttctgtaactaataaacatactatatatcgcctgcttctagggttgattta |
2723 |
T |
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| Q |
233 |
tctttatccattgttaattagggtatgttttctcacc |
269 |
Q |
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|||||| ||||||||| ||||||| |||||||||||| |
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| T |
2724 |
tctttacccattgttagttagggtctgttttctcacc |
2760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 36486025 - 36486172
Alignment:
| Q |
38 |
tacatcagccaccatctccaacttgaggctcttcttcactcctgtttcaaggtcttttttcgtttatt----catgagcttaatttcactacaacttaca |
133 |
Q |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
36486025 |
tacatcagccaccatctccaacttgagaatcttcttcactcatgtttcaaggtcttttttcatttattaattcatgagcttaatttcactacaacttaca |
36486124 |
T |
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| Q |
134 |
aaaaatttgatcagttatctagtttatatcttcatgaaaatggactag |
181 |
Q |
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||| ||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
36486125 |
aaacgtttgatcagttatatagtatatatcttcatgaaaatggactag |
36486172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 28539377 - 28539524
Alignment:
| Q |
38 |
tacatcagccaccatctccaacttgaggctcttcttcactcctgtttcaaggtcttttttcgtttatt----catgagcttaatttcactacaacttaca |
133 |
Q |
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| T |
28539377 |
tacatcagccaccatctccaacttgagaatcttcttcactcatgtttcaagatcttttttcatttattaattcatgagcttaatttcactacaacttaca |
28539476 |
T |
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| Q |
134 |
aaaaatttgatcagttatctagtttatatcttcatgaaaatggactag |
181 |
Q |
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||| ||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
28539477 |
aaacgtttgatcagttatatagtatatatcttcatgaaaatggactag |
28539524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 38 - 181
Target Start/End: Complemental strand, 31600357 - 31600210
Alignment:
| Q |
38 |
tacatcagccaccatctccaacttgaggctcttcttcactcctgtttcaaggtcttttttcgtttatt----catgagcttaatttcactacaacttaca |
133 |
Q |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
31600357 |
tacatcagccaccatctccaacttgagaatcttcttcactcatgtttcaaggtcttttttcatttattaattcatgagcttaatttcactacaacttaca |
31600258 |
T |
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| Q |
134 |
aaaaatttgatcagttatctagtttatatcttcatgaaaatggactag |
181 |
Q |
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|| ||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
31600257 |
gaacgtttgatcagttatatagtatatatcttcatgaaaatggactag |
31600210 |
T |
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