View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18007_low_49 (Length: 317)

Name: NF18007_low_49
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18007_low_49
NF18007_low_49
[»] chr6 (1 HSPs)
chr6 (153-317)||(24418175-24418338)
[»] chr3 (13 HSPs)
chr3 (198-311)||(772236-772348)
chr3 (198-314)||(37758449-37758564)
chr3 (201-311)||(12217253-12217362)
chr3 (198-311)||(2455075-2455187)
chr3 (220-317)||(7334976-7335072)
chr3 (201-311)||(7428318-7428427)
chr3 (198-264)||(9585939-9586005)
chr3 (199-264)||(764362-764427)
chr3 (197-317)||(2501394-2501513)
chr3 (198-314)||(7443702-7443817)
chr3 (288-317)||(988702-988731)
chr3 (220-317)||(2491345-2491441)
chr3 (220-317)||(13497445-13497541)
[»] chr7 (1 HSPs)
chr7 (222-311)||(27754889-27754977)
[»] scaffold0760 (1 HSPs)
scaffold0760 (200-268)||(3869-3937)
[»] scaffold0097 (1 HSPs)
scaffold0097 (197-317)||(33896-34015)
[»] scaffold1004 (1 HSPs)
scaffold1004 (200-268)||(1375-1443)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 153 - 317
Target Start/End: Complemental strand, 24418338 - 24418175
Alignment:
Q  153 ctaatggcgccagatagagaggaaaccctaataccaccgtcaaaaactcttcccttcgatcttgtagctgagattctgtgtaggcttcccgtcaagttac 252  Q
    |||||||||||||  |  ||||||||||||||| | || |||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24418338 ctaatggcgccaggcatggaggaaaccctaatatcgccatcaccaactcttcccttcgatcttgtagctgagattctgtgtaggcttcccgtgaagttac 24418239  T
Q  253 tccttcaacttcgctgtctttgcaagtcctttaatttctttaatctctgatcccaaattcgcaaa 317  Q
    ||||||||||||||||||| ||||||||||| || ||| ||||||||||||||||||||||||||    
T  24418238 tccttcaacttcgctgtctctgcaagtccttcaa-ttcattaatctctgatcccaaattcgcaaa 24418175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 772348 - 772236
Alignment:
Q  198 actcttcccttcgatcttgtagctgagattctgtgtaggcttcccgtcaagttactccttcaacttcgctgtctttgcaagtcctttaatttctttaatc 297  Q
    |||||||| ||||||||||| || |||||||||||  ||||||| || ||||||||| | || |||||||| || |||||||||||||| | || ||||     
T  772348 actcttccattcgatcttgtggcggagattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaa-tactctaata 772250  T
Q  298 tctgatcccaaatt 311  Q
    ||||||||||||||    
T  772249 tctgatcccaaatt 772236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 314
Target Start/End: Complemental strand, 37758564 - 37758449
Alignment:
Q  198 actcttcccttcgatcttgtagctgagattctgtgtaggcttcccgtcaagttactccttcaacttcgctgtctttgcaagtcctttaatttctttaatc 297  Q
    |||||||| |||||| | || || || ||||| ||||||||||| |||||||||||| | ||||| || || || ||||||||||| || ||||||||||    
T  37758564 actcttcctttcgatttggtggcagaaattctatgtaggcttcctgtcaagttactcttacaactccgatgcctctgcaagtccttgaa-ttctttaatc 37758466  T
Q  298 tctgatcccaaattcgc 314  Q
    |  ||||||||||||||    
T  37758465 ttggatcccaaattcgc 37758449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 311
Target Start/End: Original strand, 12217253 - 12217362
Alignment:
Q  201 cttcccttcgatcttgtagctgagattctgtgtaggcttcccgtcaagttactccttcaacttcgctgtctttgcaagtcctttaatttctttaatctct 300  Q
    ||||| || |||||||| || || ||| |||||||  |||| || ||||||||| |||| |||||||| || || |||||||| |||| |||||||||||    
T  12217253 cttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtccttcaatt-ctttaatctct 12217351  T
Q  301 gatcccaaatt 311  Q
    |||||||||||    
T  12217352 gatcccaaatt 12217362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 311
Target Start/End: Original strand, 2455075 - 2455187
Alignment:
Q  198 actcttcccttcgatcttgtagctgagattctgtgtaggcttcccgtcaagttactccttcaacttcgctgtctttgcaagtcctttaatttctttaatc 297  Q
    |||||||| |||||||| || || || ||||||||  ||||||| || ||||||||| | || |||||||| || |||||||||||||| |||| | ||     
T  2455075 actcttccattcgatctcgtggcggaaattctgtgccggcttcctgtgaagttactcgtgcagcttcgctgcctctgcaagtcctttaa-ttctcttata 2455173  T
Q  298 tctgatcccaaatt 311  Q
    ||||||||||||||    
T  2455174 tctgatcccaaatt 2455187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 317
Target Start/End: Complemental strand, 7335072 - 7334976
Alignment:
Q  220 ctgagattctgtgtaggcttcccgtcaagttactccttcaacttcgctgtctttgcaagtcctttaatttctttaatctctgatcccaaattcgcaaa 317  Q
    |||||||||||||||||||||| || || |||||| | || ||||| ||||| || |||| |||||| |||| | ||||||||||| |||||||||||    
T  7335072 ctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgtctctgtaagttctttaa-ttctgttatctctgatccaaaattcgcaaa 7334976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 311
Target Start/End: Complemental strand, 7428427 - 7428318
Alignment:
Q  201 cttcccttcgatcttgtagctgagattctgtgtaggcttcccgtcaagttactccttcaacttcgctgtctttgcaagtcctttaatttctttaatctct 300  Q
    ||||| || |||||||| || || ||| |||||||  |||| || ||||||||| |||| |||||||| || || |||| ||| |||| |||||||||||    
T  7428427 cttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtgcttcaatt-ctttaatctct 7428329  T
Q  301 gatcccaaatt 311  Q
    |||||||||||    
T  7428328 gatcccaaatt 7428318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 9586005 - 9585939
Alignment:
Q  198 actcttcccttcgatcttgtagctgagattctgtgtaggcttcccgtcaagttactccttcaacttc 264  Q
    ||||||||||||||||| || ||||||||| | ||||||||||| || ||| | |||||||||||||    
T  9586005 actcttcccttcgatctggttgctgagattttttgtaggcttccggtgaagctcctccttcaacttc 9585939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 764427 - 764362
Alignment:
Q  199 ctcttcccttcgatcttgtagctgagattctgtgtaggcttcccgtcaagttactccttcaacttc 264  Q
    |||||||||||||||| || ||||||||| | ||||||||||| || ||| | |||||||||||||    
T  764427 ctcttcccttcgatctggttgctgagattttctgtaggcttccagtgaagctcctccttcaacttc 764362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 317
Target Start/End: Original strand, 2501394 - 2501513
Alignment:
Q  197 aactcttcccttcgatcttgtagctgagattctgtgtaggcttcccgtcaagttactccttcaacttcgctgtctttgcaagtcctttaatttctttaat 296  Q
    ||||||||  ||||||||| |  ||||||||||||| |||||||| || || |||||  | || ||||| || ||||| |||| ||| |||| |||||||    
T  2501394 aactcttcttttcgatcttttgcctgagattctgtgcaggcttccggtgaaattactagtacagcttcgatgcctttgtaagttcttcaatt-ctttaat 2501492  T
Q  297 ctctgatcccaaattcgcaaa 317  Q
     |||||||| |||||||||||    
T  2501493 ttctgatcctaaattcgcaaa 2501513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 314
Target Start/End: Complemental strand, 7443817 - 7443702
Alignment:
Q  198 actcttcccttcgatcttgtagctgagattctgtgtaggcttcccgtcaagttactccttcaacttcgctgtctttgcaagtcctttaatttctttaatc 297  Q
    |||||||||||||||||  |  |||||||||| || |||||||| || || |||||| | |||||||| || || || |||| ||| || |||||||||     
T  7443817 actcttcccttcgatctcctccctgagattctctgcaggcttcctgtgaaattactcatacaacttcggtgcctctgtaagttcttcaa-ttctttaatt 7443719  T
Q  298 tctgatcccaaattcgc 314  Q
    ||||||||||| |||||    
T  7443718 tctgatcccaatttcgc 7443702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 317
Target Start/End: Original strand, 988702 - 988731
Alignment:
Q  288 ttctttaatctctgatcccaaattcgcaaa 317  Q
    ||||||||||||||||||||||||||||||    
T  988702 ttctttaatctctgatcccaaattcgcaaa 988731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 317
Target Start/End: Original strand, 2491345 - 2491441
Alignment:
Q  220 ctgagattctgtgtaggcttcccgtcaagttactccttcaacttcgctgtctttgcaagtcctttaatttctttaatctctgatcccaaattcgcaaa 317  Q
    |||||||||||||||||||||| || || |||||  | || ||||| || ||||| ||||  ||| | ||||||||| |||||||| |||||||||||    
T  2491345 ctgagattctgtgtaggcttccggtgaaattactggtacagcttcgatgcctttgtaagt-ttttcaattctttaatttctgatcctaaattcgcaaa 2491441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 317
Target Start/End: Original strand, 13497445 - 13497541
Alignment:
Q  220 ctgagattctgtgtaggcttcccgtcaagttactccttcaacttcgctgtctttgcaagtcctttaatttctttaatctctgatcccaaattcgcaaa 317  Q
    ||||||| || ||||||||||| || ||||||||  | |||||||| || || |||||||  ||||| |||||| |||||||||||  ||||||||||    
T  13497445 ctgagatcctttgtaggcttccggtgaagttacttgtacaacttcgatgcctctgcaagttttttaa-ttctttgatctctgatcctgaattcgcaaa 13497541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 311
Target Start/End: Original strand, 27754889 - 27754977
Alignment:
Q  222 gagattctgtgtaggcttcccgtcaagttactccttcaacttcgctgtctttgcaagtcctttaatttctttaatctctgatcccaaatt 311  Q
    ||||||||||| | ||||||||| |||||||| ||||||||| | || || || ||||||||||| |||||||||||| ||||| |||||    
T  27754889 gagattctgtgcatgcttcccgtgaagttactacttcaactttgatgcctctgtaagtcctttaa-ttctttaatctccgatccaaaatt 27754977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 3869 - 3937
Alignment:
Q  200 tcttcccttcgatcttgtagctgagattctgtgtaggcttcccgtcaagttactccttcaacttcgctg 268  Q
    |||||| || |||||||| || || || ||||||||||||||||| || |||||||||||| |||||||    
T  3869 tcttccgttagatcttgttgccgaaatcctgtgtaggcttcccgtgaaattactccttcaatttcgctg 3937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 317
Target Start/End: Original strand, 33896 - 34015
Alignment:
Q  197 aactcttcccttcgatcttgtagctgagattctgtgtaggcttcccgtcaagttactccttcaacttcgctgtctttgcaagtcctttaatttctttaat 296  Q
    ||||||||| || |||||  || |||||||||| ||||||||||| ||||| |||||| | ||||| || || || || |||| |||| | |||||| ||    
T  33896 aactcttccttttgatctcatacctgagattctatgtaggcttccggtcaaattactcatacaactccgatgcctctgtaagttctttga-ttctttgat 33994  T
Q  297 ctctgatcccaaattcgcaaa 317  Q
    ||| |||||||| ||||||||    
T  33995 ctcagatcccaatttcgcaaa 34015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1004 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 1375 - 1443
Alignment:
Q  200 tcttcccttcgatcttgtagctgagattctgtgtaggcttcccgtcaagttactccttcaacttcgctg 268  Q
    |||||| || |||||||| || || || |||||||| |||||||| || |||||||||||| |||||||    
T  1375 tcttccgttagatcttgttgccgaaatcctgtgtagacttcccgtgaaattactccttcaatttcgctg 1443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University