View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_5 (Length: 594)
Name: NF18007_low_5
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 15 - 580
Target Start/End: Complemental strand, 4646380 - 4645814
Alignment:
| Q |
15 |
cataggatgcaatcttatttgatttgttattgttatttgttctctaatatgatcagaatctatatataagcaagaaagggataataatcagttttgtgta |
114 |
Q |
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| T |
4646380 |
cataggatgcaatcttatttgatttgtgtttgttatttgttctctaatatgatcagaatctttatataagcaagaaagggataataatcagttttgtgta |
4646281 |
T |
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| Q |
115 |
aaaaacttgaaatgggaaacctcataataattgctacatgctatcttcaattctgattttagctaagagctaaaataaatgaaattggtaatgagggata |
214 |
Q |
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| T |
4646280 |
aagaacttgaaatgggaaacctcataataattgctacatgctatcttcaattctgattttagctaagagctaaaat-aatgaaattggtaatgagggaca |
4646182 |
T |
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| Q |
215 |
agttagtatccgccaaaggct---ggactcatcaatcaatcatcattaatttattcacaatcaaaacattatcctacttcctacctaacctttccattat |
311 |
Q |
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| T |
4646181 |
agttagtatccgccaaaggctggaggactcatcaatcagtcatcattaatttattcacaatcaaaacattatcctacttcctacctaacctttccattat |
4646082 |
T |
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| Q |
312 |
tagataactctactaggccccccatgcaacaatactagcacaaaaaagataggtacaaacttcaattgatggtcacaatctccatcaatattttgtatct |
411 |
Q |
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| T |
4646081 |
tagataactctactagg-cccggatccaacaacactaacacaaaaaagataggtacaaacttcaattgatggtcacaatctccatcaatattttgtatct |
4645983 |
T |
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| Q |
412 |
gaacttattttcaaccacatgcaacatttttgcacaattgcttcattcaattcaacaaatgtgtggccatttttcagctaccaattatttatttannnnn |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4645982 |
gaacttattttcaaccacatgcaacatttttgcacaatagcttcattcaattcaacaaatgtgtggccatttttcagctaccaattatttatttattttt |
4645883 |
T |
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| Q |
512 |
nnggttttagcaagttgcaatagatatcatccatcatcatccatgtatgtcatgtccatttgttgcatg |
580 |
Q |
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| T |
4645882 |
ttggttttagcaagttgcaatagatatcatccatcatcatccatgtatgtcatgtccatttgttgcatg |
4645814 |
T |
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