View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_50 (Length: 315)
Name: NF18007_low_50
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_50 |
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| [»] scaffold0428 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 31564323 - 31564033
Alignment:
| Q |
1 |
ccacaggt-tctgctcgttcacttcttcttcagtggcaggactctcaggagagggaccttaatcgttttcttctgttacatctatcatacatgattcaaa |
99 |
Q |
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|||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31564323 |
ccacaggtgtctgctcttgcacttcttcttcagtggcaggactctcaggagagggaccttaatcgttttcttctgttacatctgtcatacatgattcaaa |
31564224 |
T |
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| Q |
100 |
gttaatgaaaacattattgcnnnnnnnggaacaacttcaacactgtcatctaagtaaattaaaagaaaacattatttggtaagttaatcataaaagctgt |
199 |
Q |
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| T |
31564223 |
gttaatgaaaacattattgcaaaaaaaggaacaact---------tcatctacgtaaattaaaaggaaacattatttggtaagttaatcataaaagctgt |
31564133 |
T |
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| Q |
200 |
ttacatgcatctaattgc-nnnnnnntatgtttagatccatttgtaattttgtgagaagacatacaattggtattttcatatgtaaaatacgaaaaagtt |
298 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31564132 |
ttacatgcatctaattgcaaaaacaatatgtttagatccatttataattttgtgagaagacatacaattggtattttcatatgtaaaatacgaaaaagtt |
31564033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 33260162 - 33260220
Alignment:
| Q |
24 |
cttcttcagtggcaggactctcaggagagggaccttaatcgttttcttctgttacatct |
82 |
Q |
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| T |
33260162 |
cttcttcggttgcagggctttcaggagagggaacttgatcgttttcttctgttacatct |
33260220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 33397109 - 33397167
Alignment:
| Q |
24 |
cttcttcagtggcaggactctcaggagagggaccttaatcgttttcttctgttacatct |
82 |
Q |
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| T |
33397109 |
cttcttcagtggcaggactttcaggagagggaacttgttcagtttcttctgttacatct |
33397167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 33416620 - 33416676
Alignment:
| Q |
26 |
tcttcagtggcaggactctcaggagagggaccttaatcgttttcttctgttacatct |
82 |
Q |
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| T |
33416620 |
tcttcagtggcaggactttcaggagagggaacttgattgttttcttcagttaaatct |
33416676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 33282457 - 33282515
Alignment:
| Q |
24 |
cttcttcagtggcaggactctcaggagagggaccttaatcgttttcttctgttacatct |
82 |
Q |
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| T |
33282457 |
cttcttcaggtgcaggactttcaggagagggaacttgataattttcttctgttacatct |
33282515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 33385860 - 33385941
Alignment:
| Q |
24 |
cttcttcagtggcaggactctcaggagagggaccttaatcgttttcttctgttacatctat-catacatgattcaaagttaa |
104 |
Q |
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| T |
33385860 |
cttcttcagttggaggactttcaggagagggaactttattcttttcttcagttacatttatccatagaagattcaaagttaa |
33385941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 4228 - 4286
Alignment:
| Q |
24 |
cttcttcagtggcaggactctcaggagagggaccttaatcgttttcttctgttacatct |
82 |
Q |
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| T |
4228 |
cttcttcaggtgcaggactttcaggagtgggaacttgatcgttttcttctgttacatct |
4286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 11795 - 11714
Alignment:
| Q |
24 |
cttcttcagtggcaggactctcaggagagggaccttaatcgttttcttctgttacatctatc-atacatgattcaaagttaa |
104 |
Q |
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||||||||| |||||||| |||||||||||| ||| || |||||||||||||||||| || ||| | ||||||||||||| |
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| T |
11795 |
cttcttcaggtgcaggactttcaggagagggaacttgataattttcttctgttacatctgtcgatagaggattcaaagttaa |
11714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 17443337 - 17443267
Alignment:
| Q |
35 |
gcaggactctcaggagagggaccttaatcgttttcttctgttacatct-atcatacatgattcaaagttaa |
104 |
Q |
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| T |
17443337 |
gcaggactttcaggagagagaacttcattgttttcttctgttacatctgttcatagaggattcaaagttaa |
17443267 |
T |
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