View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_51 (Length: 314)
Name: NF18007_low_51
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_51 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: scaffold0013 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 298
Target Start/End: Original strand, 92566 - 92848
Alignment:
| Q |
14 |
caaaggatgaggatagtagatatcttcctgttgagcataaaatggaccattatccctcatacgttaaagagatgtgtaaattcatatacactgtcatgaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
92566 |
caaaggatgaggatagtagatatcttcctgttgagcataaaatggaacattatccctcatacgttaaagagatgtgtaaattcata--cactgtcatgaa |
92663 |
T |
|
| Q |
114 |
ttagagacaaagagtctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaaga |
213 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92664 |
ttagagacaaagagcctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaaga |
92763 |
T |
|
| Q |
214 |
tgagtggtgtgattggaccgacaaacctctttccgtacaagtaagacatcggtaagtataccagtcgacaatagcaccacatttt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92764 |
cgagtggtgtgattggaccgacaaacctctttccgtacaagtaagacatcggtaagtataccagtcgacaatagcaccacatttt |
92848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 14 - 298
Target Start/End: Complemental strand, 164702 - 164419
Alignment:
| Q |
14 |
caaaggatgaggatagtagatatcttcctgttgag-cataaaatggaccattatccctcatacgttaaagag-atgtgtaaattcatatacactgtcatg |
111 |
Q |
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| T |
164702 |
caaaggatggggatagtaaagatcttcctat-gagacataaaatggatcattatccctcctatgttaaaaaggatgtgtaatttcaca--cattgtgatc |
164606 |
T |
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| Q |
112 |
aattagagacaaagagtctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaa |
211 |
Q |
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| T |
164605 |
aattaaagataaagactctaacctttgcacataggtgacgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaa |
164506 |
T |
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| Q |
212 |
gatgagtggtgtgattggaccgacaaacctctttccgtacaagtaagacatcggtaagtataccagtcgacaatagcaccacatttt |
298 |
Q |
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||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| | |||||| | |||||||| ||||||||||| |
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| T |
164505 |
gatgagtggtgtgataggacctacaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacatttt |
164419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 112 - 298
Target Start/End: Complemental strand, 103639 - 103453
Alignment:
| Q |
112 |
aattagagacaaagagtctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaa |
211 |
Q |
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||||| |||||| || ||||||||||||||||||||| |||| ||| ||||||||| ||| ||||||| |||||||| |||||||||||||||||||| |
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| T |
103639 |
aattaaagacaatgactctcacctttgcacataggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagttcttctctcaactgtaa |
103540 |
T |
|
| Q |
212 |
gatgagtggtgtgattggaccgacaaacctctttccgtacaagtaagacatcggtaagtataccagtcgacaatagcaccacatttt |
298 |
Q |
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| T |
103539 |
gatgagtggtgtgatcggacccacaaatctcttcccgtacaagtaagacataggcatgtataccaatcgacaataacaccacatttt |
103453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 129 - 296
Target Start/End: Original strand, 5722471 - 5722638
Alignment:
| Q |
129 |
ctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaagatgagtggtgtgattg |
228 |
Q |
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|||||||||||||||||||| ||| |||||| ||| |||||||| ||||||||| ||| | |||||||||||||||| |||||| | ||||||||||| |
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| T |
5722471 |
ctcacctttgcacataggtgacgtactttttgccaattaactttttcataaggttctgtaaggagttcttctctcaactttaagatcaatggtgtgattg |
5722570 |
T |
|
| Q |
229 |
gaccgacaaacctctttccgtacaagtaagacatcggtaagtataccagtcgacaatagcaccacatt |
296 |
Q |
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| T |
5722571 |
gaccgacaaacctctttccatacaagtaagacataggcatgtataccaatcgacaataacacaacatt |
5722638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 129 - 296
Target Start/End: Original strand, 5670357 - 5670524
Alignment:
| Q |
129 |
ctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaagatgagtggtgtgattg |
228 |
Q |
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||||||||||||||||| |||||| |||||| ||| |||||||| ||||| ||| ||| | |||||||||||||||| ||||||||||||||| |||| |
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| T |
5670357 |
ctcacctttgcacatagatggcgtactttttgccaattaactttttcataatgttctgtaaggagttcttctctcaactttaagatgagtggtgttattg |
5670456 |
T |
|
| Q |
229 |
gaccgacaaacctctttccgtacaagtaagacatcggtaagtataccagtcgacaatagcaccacatt |
296 |
Q |
| |
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| T |
5670457 |
gaccgacaaacctcttcccatacaagtaagacataggcatgtataccaatcgacaataacacaacatt |
5670524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 129 - 296
Target Start/End: Original strand, 5692131 - 5692298
Alignment:
| Q |
129 |
ctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaagatgagtggtgtgattg |
228 |
Q |
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||||||||||||||||| |||||| |||||| ||| |||||||| ||||||||| ||| | |||||||||||||||| |||| | | ||||||||||| |
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| T |
5692131 |
ctcacctttgcacatagatggcgtactttttgccaattaactttttcataaggttctgtaaggagttcttctctcaactttaaggtcaatggtgtgattg |
5692230 |
T |
|
| Q |
229 |
gaccgacaaacctctttccgtacaagtaagacatcggtaagtataccagtcgacaatagcaccacatt |
296 |
Q |
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||||||||||||||||||| |||||||||||||| || | |||||||| ||||||||| ||| ||||| |
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| T |
5692231 |
gaccgacaaacctctttccatacaagtaagacataggcatgtataccaatcgacaataacacaacatt |
5692298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 131 - 298
Target Start/End: Original strand, 12137677 - 12137844
Alignment:
| Q |
131 |
cacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaagatgagtggtgtgattgga |
230 |
Q |
| |
|
|||||| ||||| |||| |||||||||||||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||| |||||||||| | |
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| T |
12137677 |
caccttcgcacactggtgacgtgcttttttccaattaacttttgcataaggttcagtatagagttcttctctcaactgtaagatgagcggtgtgattgaa |
12137776 |
T |
|
| Q |
231 |
ccgacaaacctctttccgtacaagtaagacatcggtaagtataccagtcgacaatagcaccacatttt |
298 |
Q |
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|| ||||| |||||||| |||||||||||||| || | |||||||| |||||| || ||||||||||| |
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| T |
12137777 |
cccacaaatctctttccatacaagtaagacataggcatgtataccaatcgacagtaacaccacatttt |
12137844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 128 - 298
Target Start/End: Complemental strand, 13052548 - 13052378
Alignment:
| Q |
128 |
tctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaagatgagtggtgtgatt |
227 |
Q |
| |
|
|||||||||||||||| |||| |||| ||| ||| | |||||| | ||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
13052548 |
tctcacctttgcacattggtgacgtgatttgaaccaatcaactttttcgtaaggttgattatgaatttcttctctcaactgtaagatgagtggtgtgatt |
13052449 |
T |
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| Q |
228 |
ggaccgacaaacctctttccgtacaagtaagacatcggtaagtataccagtcgacaatagcaccacatttt |
298 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||| || | |||| || ||||||||| ||||||||||| |
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| T |
13052448 |
cgacccacaaacctcttcccgtacaagtaagacataggcatgtatgtcaatcgacaataacaccacatttt |
13052378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 1941994 - 1942038
Alignment:
| Q |
218 |
tggtgtgattggaccgacaaacctctttccgtacaagtaagacat |
262 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
1941994 |
tggtgtgattggaccaacaaacctctttccgtacaagtaacacat |
1942038 |
T |
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