View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_56 (Length: 301)
Name: NF18007_low_56
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_56 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 3681122 - 3681422
Alignment:
| Q |
1 |
taatgatgatattgtatattatttccttatacagaattctattttataaacattatgtacactatacatccaagtaagttacaactacttgttatccctt |
100 |
Q |
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| T |
3681122 |
taatgatgatattgtatattatttccttatacagaattctatttcataaacattatgtacactatacatacaagtaagttacaactacttgttatccctt |
3681221 |
T |
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| Q |
101 |
accaagcaaagaatatctgatgaaggaacaaaagtacaataaagaagagtacaacatgattagaaaaatgagatgcacttgaggcataataatagtaata |
200 |
Q |
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| T |
3681222 |
accaagcaaagaatatctgatgaaggaacaaaagtacaataaagaagagtacaacatgattagaaaaatgagatgcacttgaggcataataatagtaata |
3681321 |
T |
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| Q |
201 |
aggatatggatagttttgtggtggtccaccaattactttaggttgtccttgacctgaacccgaagaaggcgaagatttcaaaggtggcggaggagtttcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
3681322 |
gggatatggatagttttgtggtggtccaccaattactttaggttgtccttgacctgaacctgaagaaggcgaagatttcaaaggtggtggaggagtttcc |
3681421 |
T |
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| Q |
301 |
c |
301 |
Q |
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| T |
3681422 |
c |
3681422 |
T |
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