View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_64 (Length: 279)
Name: NF18007_low_64
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_64 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 37442928 - 37442679
Alignment:
| Q |
19 |
ccaccaaatatttacttattgctaccacaaaccctagtactttatacaaaggagaggattactattgaacaatagaaaatagatgaggtgtatatatata |
118 |
Q |
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| T |
37442928 |
ccaccaaatatttacttattgctaccacaaaccctagtactttatacga-ggagaggattactattgaacaatagaaaatagatgaggtgtatatatata |
37442830 |
T |
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| Q |
119 |
cgtaccaaactagctattcaacaatatccacatcatcagtcnnnnnnnttc---acattttataaagaactactaatatattcgtatcatcacataatta |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37442829 |
cgtaccaaactagctattcaacaatatccacatcatcagtcaaaaaaattcagaacattttataaagaactactaatatattcatatcatcacataatta |
37442730 |
T |
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| Q |
216 |
agacagcaaacactattagattatattcaagatcatcacataattcatatc |
266 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37442729 |
agacagcaaacactattagaatatattcaagatcatcacataattcatatc |
37442679 |
T |
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