View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_65 (Length: 276)
Name: NF18007_low_65
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_65 |
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| [»] scaffold1004 (1 HSPs) |
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| [»] scaffold0760 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 24418020 - 24417829
Alignment:
| Q |
18 |
ccttatcgcctgtgttcttgcaacggcatcctttgtttcaccatgttaaacagtcctgctattttgtggaacccttcgattagaacattcaggatcttgc |
117 |
Q |
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| T |
24418020 |
ccttatcgcgtgtgctcttgcaacggcatcctttgtttcaccatggctgacggttctgctattttgtggaacccttcgattagaacattcaagatcttgc |
24417921 |
T |
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| Q |
118 |
ctcctttggatatggataaacacc---ttctctccgaatatagctttgggtataatccttccattaataattacaagattgttgctatttct |
206 |
Q |
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| T |
24417920 |
ctcctttgggtatggataaacaactttttctctccttatatagctttgggtataatccttccgttaataattacaagattgttgctatttct |
24417829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 24417791 - 24417758
Alignment:
| Q |
215 |
tgggtacagattcttggagaacgatgcaagactt |
248 |
Q |
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| T |
24417791 |
tgggtacagattcttggagaacgatacaagactt |
24417758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1004 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold1004
Description:
Target: scaffold1004; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 40 - 207
Target Start/End: Original strand, 1688 - 1849
Alignment:
| Q |
40 |
acggcatcctttgtttcaccatgttaaacagtcctgctattttgtggaacccttcgattagaacattcaggatcttgcctcctttggatatggataaaca |
139 |
Q |
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| T |
1688 |
acggcatcctttgtttcaccataaataatggtcctgctgttttgtggaacccttccattagaacattcaagattttgcctcctttggat---gataaaca |
1784 |
T |
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| Q |
140 |
ccttctctccgaatatagctttgggtataatccttccattaataattacaagattgttgctatttctc |
207 |
Q |
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| T |
1785 |
---tttatccgcttatagtttcgggtatgatcatttaattaataattataagattgttgctctttctc |
1849 |
T |
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Target: scaffold0760 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0760
Description:
Target: scaffold0760; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 4174 - 4271
Alignment:
| Q |
31 |
gttcttgcaacggcatcctttgtttcaccatgttaaacagtcctgctattttgtggaacccttcgattagaacattcaggatcttgcctcctttggat |
128 |
Q |
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| T |
4174 |
gttcttgtgacggcatcctttgtttcaccataaataatggtcctgctgttttgtggaacccttccattagaacattcaagattttgcctcctttggat |
4271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 13497782 - 13497829
Alignment:
| Q |
74 |
tgctattttgtggaacccttcgattagaacattcaggatcttgcctcc |
121 |
Q |
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| T |
13497782 |
tgctattttgtggaacccttccattagaaaattcaagatattgcctcc |
13497829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 9587722 - 9587694
Alignment:
| Q |
33 |
tcttgcaacggcatcctttgtttcaccat |
61 |
Q |
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| T |
9587722 |
tcttgcaacggcatcctttgtttcaccat |
9587694 |
T |
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