View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18007_low_66 (Length: 272)

Name: NF18007_low_66
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18007_low_66
NF18007_low_66
[»] chr1 (2 HSPs)
chr1 (16-225)||(3547117-3547332)
chr1 (199-251)||(20806962-20807014)
[»] chr7 (8 HSPs)
chr7 (201-254)||(35153216-35153269)
chr7 (197-255)||(3203722-3203780)
chr7 (197-255)||(3203992-3204050)
chr7 (203-255)||(3203812-3203864)
chr7 (197-259)||(3203537-3203600)
chr7 (197-259)||(3203898-3203960)
chr7 (141-232)||(31860848-31860936)
chr7 (128-187)||(26979455-26979515)
[»] chr2 (6 HSPs)
chr2 (205-259)||(35687455-35687509)
chr2 (145-251)||(38179623-38179726)
chr2 (190-246)||(35687346-35687402)
chr2 (203-245)||(11879901-11879943)
chr2 (190-255)||(35711571-35711636)
chr2 (204-255)||(11879981-11880033)
[»] chr5 (3 HSPs)
chr5 (207-255)||(18960678-18960726)
chr5 (197-255)||(10928024-10928082)
chr5 (197-255)||(12513154-12513212)
[»] chr4 (11 HSPs)
chr4 (197-252)||(43107956-43108011)
chr4 (196-255)||(43107865-43107924)
chr4 (217-255)||(3343690-3343728)
chr4 (205-255)||(3343867-3343917)
chr4 (197-255)||(39290050-39290108)
chr4 (197-255)||(43108136-43108194)
chr4 (218-259)||(26561770-26561811)
chr4 (203-256)||(39290194-39290247)
chr4 (207-255)||(3343421-3343469)
chr4 (210-250)||(3343665-3343705)
chr4 (206-254)||(43108050-43108098)
[»] chr3 (1 HSPs)
chr3 (141-191)||(25203363-25203413)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 3547332 - 3547117
Alignment:
Q  16 atggtgcatattatttcttcatatttcagtgtataattgatatatgttgctaatttaaatttaaat------aggagatttccattttaaaagacaatgc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||| |  ||||||||||| ||||    
T  3547332 atggtgcatattatttcttcatatttcagtgtataattgatatatgttgctaatttaaatttaaatttaaataggagattgctcttttaaaagaccatgc 3547233  T
Q  110 tatttgtacatttgggcgtctaaaatcatcgcaaatgtcaagagtaaagcatgcaacaagttaaatgttatctatgcaataataagtcaagtatcatgac 209  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||| | |||||||||||||||||||||||||||    
T  3547232 tatttgtacatttgggcgcctaaaatcatcgcaaatgtcaagagtaaagcatgcaacaagttaagcgttacccatgcaataataagtcaagtatcatgac 3547133  T
Q  210 tcaagaggaatacatg 225  Q
    | ||||||||||||||    
T  3547132 ttaagaggaatacatg 3547117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 20806962 - 20807014
Alignment:
Q  199 agtatcatgactcaagaggaatacatgcaacaagacaagtatcaagaggaata 251  Q
    |||||||||||||| ||||||||||||||||||  ||| | ||||||||||||    
T  20806962 agtatcatgactcatgaggaatacatgcaacaaaccaaatgtcaagaggaata 20807014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 35153216 - 35153269
Alignment:
Q  201 tatcatgactcaagaggaatacatgcaacaagacaagtatcaagaggaatacat 254  Q
    |||||||||||| || |||||||||||||||||||||| |||||||||||||||    
T  35153216 tatcatgactcatgaagaatacatgcaacaagacaagtgtcaagaggaatacat 35153269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 3203780 - 3203722
Alignment:
Q  197 caagtatcatgactcaagaggaatacatgcaacaagacaagtatcaagaggaatacatg 255  Q
    ||||| |||||||||| |||||||||| |||||||| ||||| ||||||||||||||||    
T  3203780 caagtgtcatgactcatgaggaatacaggcaacaagtcaagtctcaagaggaatacatg 3203722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 3204050 - 3203992
Alignment:
Q  197 caagtatcatgactcaagaggaatacatgcaacaagacaagtatcaagaggaatacatg 255  Q
    ||||| |||||||||| ||||||||||||||| ||||||||| | |||| |||||||||    
T  3204050 caagtgtcatgactcatgaggaatacatgcaataagacaagtgtaaagaagaatacatg 3203992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 3203864 - 3203812
Alignment:
Q  203 tcatgactcaagaggaatacatgcaacaagacaagtatcaagaggaatacatg 255  Q
    |||||||||| ||||||||||| ||||||| ||||| ||||||| ||||||||    
T  3203864 tcatgactcatgaggaatacatccaacaagccaagtgtcaagagaaatacatg 3203812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 3203600 - 3203537
Alignment:
Q  197 caagtatcatgactcaagaggaatacatgcaacaa-gacaagtatcaagaggaatacatgtagc 259  Q
    |||||||  ||||||| ||||||||||||||| || ||||||| |||||||||||||| |||||    
T  3203600 caagtattgtgactcatgaggaatacatgcaaaaaagacaagtgtcaagaggaatacaggtagc 3203537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 3203960 - 3203898
Alignment:
Q  197 caagtatcatgactcaagaggaatacatgcaacaagacaagtatcaagaggaatacatgtagc 259  Q
    ||||| |||||| ||| || |||||||||||||||| ||||| | ||||| ||||||||||||    
T  3203960 caagtgtcatgaatcatgatgaatacatgcaacaagtcaagtgttaagagaaatacatgtagc 3203898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 232
Target Start/End: Original strand, 31860848 - 31860936
Alignment:
Q  141 caaatgtcaagagtaaagcatgcaacaagttaaatgttatctatgcaataataagtcaagtatcatgactcaagaggaatacatgcaacaag 232  Q
    ||||||| ||||| ||  |||||||||||| || ||||| | |||||||||    |||||| ||||||||||  ||||||||||||||||||    
T  31860848 caaatgttaagaggaatccatgcaacaagtcaagtgttacccatgcaataaa---tcaagtgtcatgactcataaggaatacatgcaacaag 31860936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 26979515 - 26979455
Alignment:
Q  128 tctaaaat-catcgcaaatgtcaagagtaaagcatgcaacaagttaaatgttatctatgca 187  Q
    |||||||| |||| ||| |||||||| ||| |||||||||||||||| ||||||| |||||    
T  26979515 tctaaaatgcatcccaagtgtcaagactaatgcatgcaacaagttaagtgttatccatgca 26979455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 35687455 - 35687509
Alignment:
Q  205 atgactcaagaggaatacatgcaacaagacaagtatcaagaggaatacatgtagc 259  Q
    ||||||||  |||||||||||||||||||||||| |||||| |||||||||||||    
T  35687455 atgactcataaggaatacatgcaacaagacaagtgtcaagaagaatacatgtagc 35687509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 38179623 - 38179726
Alignment:
Q  145 tgtcaagagtaaagcatgcaacaagttaaatgttatctatgcaataataagtcaagtatcatgactcaagaggaatacatgcaacaagacaagtatcaag 244  Q
    |||||||||||| |||||||||||||||| ||||||  |||||||||     ||||| |||||||||| ||| ||||||||||||| | ||  | |||||    
T  38179623 tgtcaagagtaatgcatgcaacaagttaagtgttatacatgcaataaac---caagtgtcatgactcatgagaaatacatgcaacatgccagatgtcaag 38179719  T
Q  245 aggaata 251  Q
    |||||||    
T  38179720 aggaata 38179726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 35687346 - 35687402
Alignment:
Q  190 aataagtcaagtatcatgactcaagaggaatacatgcaacaagacaagtatcaagag 246  Q
    ||||| |||||| |||||||||| ||| ||||||||||||||| |||||| ||||||    
T  35687346 aataaatcaagtgtcatgactcatgagaaatacatgcaacaagccaagtaccaagag 35687402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 11879943 - 11879901
Alignment:
Q  203 tcatgactcaagaggaatacatgcaacaagacaagtatcaaga 245  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||    
T  11879943 tcatgattcatgaggaatacatgcaacaagccaagtatcaaga 11879901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 35711571 - 35711636
Alignment:
Q  190 aataagtcaagtatcatgactcaagaggaatacatgcaacaagacaagtatcaagaggaatacatg 255  Q
    ||||| |||||| |||||| ||  ||||||||||||||||| | ||||| |||| |||||||||||    
T  35711571 aataaatcaagtgtcatgattcgtgaggaatacatgcaacatgtcaagtgtcaaaaggaatacatg 35711636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 11880033 - 11879981
Alignment:
Q  204 catgactcaagaggaatacatgcaa-caagacaagtatcaagaggaatacatg 255  Q
    ||||||||| ||||||||||| ||| |||| ||||| ||||||||||||||||    
T  11880033 catgactcatgaggaatacatacaaacaagtcaagtgtcaagaggaatacatg 11879981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 18960678 - 18960726
Alignment:
Q  207 gactcaagaggaatacatgcaacaagacaagtatcaagaggaatacatg 255  Q
    |||||| ||||||||||||||||||| ||||| ||||||||||||||||    
T  18960678 gactcatgaggaatacatgcaacaagccaagtgtcaagaggaatacatg 18960726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 10928082 - 10928024
Alignment:
Q  197 caagtatcatgactcaagaggaatacatgcaacaagacaagtatcaagaggaatacatg 255  Q
    ||||| |||||||||| ||| ||||||||||| ||| ||||| ||||||||||| ||||    
T  10928082 caagtgtcatgactcaggagaaatacatgcaataagccaagtgtcaagaggaatgcatg 10928024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 12513212 - 12513154
Alignment:
Q  197 caagtatcatgactcaagaggaatacatgcaacaagacaagtatcaagaggaatacatg 255  Q
    ||||| |||||||| | || |||||||||||||||  ||||| ||||||||||||||||    
T  12513212 caagtgtcatgacttatgaagaatacatgcaacaattcaagtgtcaagaggaatacatg 12513154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 43107956 - 43108011
Alignment:
Q  197 caagtatcatgactcaagaggaatacatgcaacaagacaagtatcaagaggaatac 252  Q
    ||||| |||||||||| ||||||||||||||||||| ||| | |||||||||||||    
T  43107956 caagtgtcatgactcatgaggaatacatgcaacaagccaaatgtcaagaggaatac 43108011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 43107865 - 43107924
Alignment:
Q  196 tcaagtatcatgactcaagaggaatacatgcaacaagacaagtatcaagaggaatacatg 255  Q
    |||||| |||||||||| |||||||||||||| |||| ||||| ||||||| || |||||    
T  43107865 tcaagtgtcatgactcacgaggaatacatgcagcaagtcaagtgtcaagagaaacacatg 43107924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 3343728 - 3343690
Alignment:
Q  217 gaatacatgcaacaagacaagtatcaagaggaatacatg 255  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  3343728 gaatacatgcaacaagccaagtttcaagaggaatacatg 3343690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 3343917 - 3343867
Alignment:
Q  205 atgactcaagaggaatacatgcaacaagacaagtatcaagaggaatacatg 255  Q
    ||||||||  |||||||||||||||||| ||| | ||||||||||||||||    
T  3343917 atgactcattaggaatacatgcaacaagccaaatgtcaagaggaatacatg 3343867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 39290050 - 39290108
Alignment:
Q  197 caagtatcatgactcaagaggaatacatgcaacaagacaagtatcaagaggaatacatg 255  Q
    ||||| |||||||  | ||||||||||||||||||| ||||| ||||||| ||||||||    
T  39290050 caagtgtcatgacatatgaggaatacatgcaacaagccaagtgtcaagagaaatacatg 39290108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 43108136 - 43108194
Alignment:
Q  197 caagtatcatgactcaagaggaatacatgcaacaagacaagtatcaagaggaatacatg 255  Q
    |||||||| ||||||| || |||||||||||||||| ||||| ||||||  ||||||||    
T  43108136 caagtatcgtgactcatgatgaatacatgcaacaagtcaagtgtcaagaataatacatg 43108194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 26561811 - 26561770
Alignment:
Q  218 aatacatgcaacaagacaagtatcaagaggaatacatgtagc 259  Q
    ||||||||||||||| ||| | ||||||||||||||||||||    
T  26561811 aatacatgcaacaagtcaaatgtcaagaggaatacatgtagc 26561770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 39290194 - 39290247
Alignment:
Q  203 tcatgactcaagaggaatacatgcaacaagacaagtatcaagaggaatacatgt 256  Q
    |||||||||| ||| ||||||||||| |||  |||| |||||||||||||||||    
T  39290194 tcatgactcatgagaaatacatgcaaaaagtaaagtgtcaagaggaatacatgt 39290247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 3343469 - 3343421
Alignment:
Q  207 gactcaagaggaatacatgcaacaagacaagtatcaagaggaatacatg 255  Q
    |||||| || |||||||||||||||| ||| | ||||||||||||||||    
T  3343469 gactcatgatgaatacatgcaacaagccaaatgtcaagaggaatacatg 3343421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 3343705 - 3343665
Alignment:
Q  210 tcaagaggaatacatgcaacaagacaagtatcaagaggaat 250  Q
    ||||||||||||||||||||||| || || |||||||||||    
T  3343705 tcaagaggaatacatgcaacaagccaggtgtcaagaggaat 3343665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 43108050 - 43108098
Alignment:
Q  206 tgactcaagaggaatacatgcaacaagacaagtatcaagaggaatacat 254  Q
    ||||||| ||| ||||||||||||||| ||||| | |||||||||||||    
T  43108050 tgactcacgagaaatacatgcaacaagccaagtgttaagaggaatacat 43108098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 25203413 - 25203363
Alignment:
Q  141 caaatgtcaagagtaaagcatgcaacaagttaaatgttatctatgcaataa 191  Q
    |||||||||||||||| ||||| |||||||||| ||||| | |||||||||    
T  25203413 caaatgtcaagagtaatgcatgtaacaagttaagtgttaccaatgcaataa 25203363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University