View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_68 (Length: 262)
Name: NF18007_low_68
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 16924909 - 16925048
Alignment:
| Q |
1 |
cacaattcgtcaagagagaaaaaacatatgtataatttagataaataaatttgaatagtgagatattacacttttattccttcatgtgtaagttacacat |
100 |
Q |
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| T |
16924909 |
cacaattcgtcaagagagaaaaaacatatgtataatttagataaataaatttgaatagtgagatattacacttttattccttcatgtgtaagttacacat |
16925008 |
T |
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| Q |
101 |
aagaaaatccattccctaaattttttggtatcaacaagca |
140 |
Q |
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| T |
16925009 |
aataaaatccattccctaaattttttggtatcaacaagca |
16925048 |
T |
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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 16925114 - 16925157
Alignment:
| Q |
208 |
actaaaattcctgaattgtatatccttatttattaattgatatt |
251 |
Q |
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| T |
16925114 |
actaaaattcctgaattgtatatccttatttattaattgatatt |
16925157 |
T |
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