View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_low_7 (Length: 578)
Name: NF18007_low_7
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 7 - 348
Target Start/End: Original strand, 55696758 - 55697099
Alignment:
| Q |
7 |
tgagatgaaggaaaacgatccccagattcatgggacttgtaaatgtggagacgggaacccaaaccacgaaagccttcaactggtaaatatttcacagacg |
106 |
Q |
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||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55696758 |
tgagatgaaggaagacgatcaccggattcatgggacttgtaaatgtggagacgggaacccaaaccacgaaagccttcaactggtaaatatttcacagacg |
55696857 |
T |
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| Q |
107 |
tccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatctgccaagttttttcaaacagactgttaaaatatgaaatgtaaaaact |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55696858 |
tccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatctgccaagttttttcaaacagactgttaaaatatgaaatgtaaaaact |
55696957 |
T |
|
| Q |
207 |
gagcagcatctcttatcaaatcttgatatataaagttgttagaaaaacattgcagaacaaaatatctgagcacgcaataacaacctagattaagagatcc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
55696958 |
gagcagcatctcttatcaaatcttgatatataaagttgttagaaaaacattgcagaacaaaatatctgaggacgcaataacaacctagattaagagatcc |
55697057 |
T |
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| Q |
307 |
tggataaattaaatatagcttgaggaagttgataatcaaatt |
348 |
Q |
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| T |
55697058 |
tggataaattaaatatagcttgaggaagttgataatcaaatt |
55697099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 55697407 - 55697453
Alignment:
| Q |
302 |
gatcctggataaattaaatatagcttgaggaagttgataatcaaatt |
348 |
Q |
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| T |
55697407 |
gatcctggataaattaaatatagcttgaggaagttgataatcaaatt |
55697453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 4e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 350 - 561
Target Start/End: Original strand, 32012017 - 32012232
Alignment:
| Q |
350 |
aagaagttgaaggctttgcatgaggtgtacgagggaggatgcatgagtcatcgttcagacaggccctagatataagttgtctttattggctcaagcatgt |
449 |
Q |
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| T |
32012017 |
aagaagttgaaggctttgcatgaggggaacaggggaggatgcatgagtcattgtttagacaggccctagatataagttgtctttattggctcaagcatgt |
32012116 |
T |
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| Q |
450 |
catc----acattattgaatatggtatattgtctgcatttgtcgagagatgacacgacaaggcttctagctttcatcttctgattgggaagatggcaatg |
545 |
Q |
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| T |
32012117 |
catttataacattattgaatatggtatattgtctgcatttgttgagagatgacacgacaaggcttctagctttcatcttctgattgggaagatggcaatg |
32012216 |
T |
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| Q |
546 |
acactacatgatgttt |
561 |
Q |
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| T |
32012217 |
acactacatgatgttt |
32012232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 60 - 171
Target Start/End: Original strand, 9235226 - 9235337
Alignment:
| Q |
60 |
ggaacccaaaccacgaaagccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatc |
159 |
Q |
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||||| ||| ||||| || |||||||||||||||| ||||||||| ||||||||||| |||||||| ||||||| || |||| ||||||||| || ||| |
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| T |
9235226 |
ggaactcaagccacggaaaccttcaactggtaaatgtttcacagatgtccaaaagaacagaagaactttcttttgctctgctgacattctcccgacgatc |
9235325 |
T |
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| Q |
160 |
tgccaagttttt |
171 |
Q |
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| T |
9235326 |
tgccaagttttt |
9235337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 9246830 - 9246920
Alignment:
| Q |
79 |
ccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatctgccaagttt |
169 |
Q |
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| T |
9246830 |
ccttcaactggtaaatgtttcacagatgtccagaagaacagaagaaccttcttttgctctgctggcattctcccaacgatctgccaagttt |
9246920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 65 - 172
Target Start/End: Original strand, 9254973 - 9255080
Alignment:
| Q |
65 |
ccaaaccacgaaagccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatctgcca |
164 |
Q |
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| T |
9254973 |
ccaaaccatggaaacctttaactggtaaatgtttcacagatgtccaaaagaacagaagaaccttcctttgctctgctgacattcttccaacgatctgcca |
9255072 |
T |
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| Q |
165 |
agtttttt |
172 |
Q |
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|||||||| |
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| T |
9255073 |
agtttttt |
9255080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 9264993 - 9265047
Alignment:
| Q |
79 |
ccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttctttt |
133 |
Q |
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| T |
9264993 |
ccttcgactggtaaatgtttcactgatgtccaaaagaacagaagaaccttctttt |
9265047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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