View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18007_low_72 (Length: 254)

Name: NF18007_low_72
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18007_low_72
NF18007_low_72
[»] chr2 (4 HSPs)
chr2 (23-135)||(6633305-6633416)
chr2 (135-167)||(10979761-10979793)
chr2 (135-200)||(9362184-9362249)
chr2 (160-197)||(10454175-10454212)
[»] chr5 (3 HSPs)
chr5 (135-200)||(12874060-12874125)
chr5 (135-201)||(11465241-11465305)
chr5 (135-167)||(43466671-43466703)
[»] scaffold0238 (1 HSPs)
scaffold0238 (135-197)||(14018-14080)
[»] chr8 (1 HSPs)
chr8 (134-200)||(8813557-8813623)
[»] chr6 (4 HSPs)
chr6 (135-200)||(27771208-27771273)
chr6 (135-200)||(27118760-27118825)
chr6 (135-190)||(34416745-34416800)
chr6 (135-200)||(24691796-24691861)
[»] chr4 (6 HSPs)
chr4 (134-196)||(54568373-54568435)
chr4 (135-174)||(15709422-15709461)
chr4 (137-174)||(8194621-8194658)
chr4 (135-168)||(31523593-31523626)
chr4 (134-174)||(6982395-6982435)
chr4 (135-167)||(22734670-22734702)
[»] scaffold0001 (1 HSPs)
scaffold0001 (130-197)||(414521-414588)
[»] chr1 (3 HSPs)
chr1 (134-201)||(45237689-45237756)
chr1 (162-197)||(12602862-12602897)
chr1 (135-167)||(40911126-40911158)
[»] chr7 (5 HSPs)
chr7 (154-200)||(37446785-37446831)
chr7 (134-190)||(14591865-14591921)
chr7 (134-190)||(16011456-16011512)
chr7 (127-176)||(39739002-39739050)
chr7 (135-167)||(10643186-10643218)
[»] scaffold0642 (1 HSPs)
scaffold0642 (137-174)||(7755-7792)
[»] scaffold0345 (1 HSPs)
scaffold0345 (137-174)||(17668-17705)
[»] scaffold0105 (1 HSPs)
scaffold0105 (137-174)||(21277-21314)
[»] chr3 (1 HSPs)
chr3 (134-174)||(54420779-54420819)


Alignment Details
Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 6633416 - 6633305
Alignment:
Q  23 tctttcaattgtctataatatatttaagttcttgtgtatttattgaagcgatgatactttgatttttgaaatgctttgacgaaattaacaacaagataca 122  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6633416 tctttcaattgtctataatatattta-gttcttgtgtatttgttgaagcgatgatactttgatttttgaaatgctttcacgaaattaacaacaagataca 6633318  T
Q  123 ataatttatatta 135  Q
    |||||||||||||    
T  6633317 ataatttatatta 6633305  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 10979761 - 10979793
Alignment:
Q  135 actagactcttgacccgtgctatcgcacgggtc 167  Q
    |||||||||||||||||||||||||||||||||    
T  10979761 actagactcttgacccgtgctatcgcacgggtc 10979793  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 9362249 - 9362184
Alignment:
Q  135 actagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtcgcaa 200  Q
    |||||||| ||||||||  ||| | ||||||||||   ||| ||||||||||||||||||||||||    
T  9362249 actagactgttgacccgaactaccccacgggtccttctgagaagaagttaaacgaataagtcgcaa 9362184  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 10454212 - 10454175
Alignment:
Q  160 cacgggtcctatcgagcagaagttaaacgaataagtcg 197  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  10454212 cacgggttctaccgagcagaagttaaacgaataagtcg 10454175  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 12874125 - 12874060
Alignment:
Q  135 actagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtcgcaa 200  Q
    |||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||    
T  12874125 actagactcttgacccgtgctaccgcacgggtcctaccgagaagaagttaaacgaataagtcgcaa 12874060  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 11465241 - 11465305
Alignment:
Q  135 actagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtcgcaat 201  Q
    |||||||||||||||||||| |  |||||||||||| | |  |||| ||||||||||||||||||||    
T  11465241 actagactcttgacccgtgcga--gcacgggtcctaccaaaaagaaattaaacgaataagtcgcaat 11465305  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 43466671 - 43466703
Alignment:
Q  135 actagactcttgacccgtgctatcgcacgggtc 167  Q
    |||||||||||||||||||||||||| ||||||    
T  43466671 actagactcttgacccgtgctatcgcccgggtc 43466703  T

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Target: scaffold0238 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 14080 - 14018
Alignment:
Q  135 actagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtcg 197  Q
    |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  14080 actagactcttgacccgtgctatcgcacgggtcctaccgaacagcagttaaacgaataagtcg 14018  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 8813623 - 8813557
Alignment:
Q  134 tactagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtcgcaa 200  Q
    |||||| |||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||    
T  8813623 tactagcctcttgacccgtgctatcgcacaggtcctaccgagaagaagttaaacgaataagtcgcaa 8813557  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 27771273 - 27771208
Alignment:
Q  135 actagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtcgcaa 200  Q
    |||||||||||||||||||||| ||||||||||||| | || ||||||||||||||||||||||||    
T  27771273 actagactcttgacccgtgctaccgcacgggtcctaccaagaagaagttaaacgaataagtcgcaa 27771208  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 27118760 - 27118825
Alignment:
Q  135 actagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtcgcaa 200  Q
    |||||||||||| ||||||| || ||||||||| || |||| ||||||||||||||| ||||||||    
T  27118760 actagactcttgtcccgtgcgatagcacgggtcataccgagaagaagttaaacgaatgagtcgcaa 27118825  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 34416745 - 34416800
Alignment:
Q  135 actagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaa 190  Q
    |||||||||||||||||||||| ||||||||||| |  ||| ||||||||||||||    
T  34416745 actagactcttgacccgtgctaccgcacgggtccaactgagaagaagttaaacgaa 34416800  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 24691861 - 24691796
Alignment:
Q  135 actagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtcgcaa 200  Q
    ||||||||||||||| |||||| ||||||| ||||| | |  |||| |||||| ||||||||||||    
T  24691861 actagactcttgaccagtgctaccgcacggatcctaccaaaaagaacttaaacaaataagtcgcaa 24691796  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 54568373 - 54568435
Alignment:
Q  134 tactagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtc 196  Q
    |||||||||||||||||||||||||| | ||||| ||||||| ||||||||||||||||||||    
T  54568373 tactagactcttgacccgtgctatcgtatgggtcatatcgagaagaagttaaacgaataagtc 54568435  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 15709461 - 15709422
Alignment:
Q  135 actagactcttgacccgtgctatcgcacgggtcctatcga 174  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  15709461 actagactcttgacccgtgctgtcgcacgggtcctatcga 15709422  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 8194621 - 8194658
Alignment:
Q  137 tagactcttgacccgtgctatcgcacgggtcctatcga 174  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  8194621 tagactcttgacccgtgctgttgcacgggtcctatcga 8194658  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 31523593 - 31523626
Alignment:
Q  135 actagactcttgacccgtgctatcgcacgggtcc 168  Q
    |||||||||||||||||||||| |||||||||||    
T  31523593 actagactcttgacccgtgctaccgcacgggtcc 31523626  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 6982435 - 6982395
Alignment:
Q  134 tactagactcttgacccgtgctatcgcacgggtcctatcga 174  Q
    ||||||||| | |||||||||||||||||||||| ||||||    
T  6982435 tactagactttcgacccgtgctatcgcacgggtcttatcga 6982395  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 22734702 - 22734670
Alignment:
Q  135 actagactcttgacccgtgctatcgcacgggtc 167  Q
    |||||||||||||| ||||||||||||||||||    
T  22734702 actagactcttgacacgtgctatcgcacgggtc 22734670  T

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Target: scaffold0001 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 414588 - 414521
Alignment:
Q  130 atattactagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtcg 197  Q
    |||| |||||||||||||| ||||||||||||||||||||| |||| ||  |||||||||||||||||    
T  414588 atatgactagactcttgacacgtgctatcgcacgggtcctaccgagaagttgttaaacgaataagtcg 414521  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 45237756 - 45237689
Alignment:
Q  134 tactagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtcgcaat 201  Q
    ||||||||| ||||||||| ||| ||||||||||||   ||| |||||||||||||||||||||||||    
T  45237756 tactagactgttgacccgttctaccgcacgggtccttctgagaagaagttaaacgaataagtcgcaat 45237689  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 197
Target Start/End: Original strand, 12602862 - 12602897
Alignment:
Q  162 cgggtcctatcgagcagaagttaaacgaataagtcg 197  Q
    ||||||||| ||||||||||||||||||||||||||    
T  12602862 cgggtcctaccgagcagaagttaaacgaataagtcg 12602897  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 40911158 - 40911126
Alignment:
Q  135 actagactcttgacccgtgctatcgcacgggtc 167  Q
    |||||||||| ||||||||||||||||||||||    
T  40911158 actagactctcgacccgtgctatcgcacgggtc 40911126  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 37446785 - 37446831
Alignment:
Q  154 ctatcgcacgggtcctatcgagcagaagttaaacgaataagtcgcaa 200  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  37446785 ctatcgcacgggtactaccgagaagaagttaaacgaataagtcgcaa 37446831  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 14591921 - 14591865
Alignment:
Q  134 tactagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaa 190  Q
    ||||||||||||||||||||||| ||||||||||| |   || ||||||||||||||    
T  14591921 tactagactcttgacccgtgctaccgcacgggtccaactaagaagaagttaaacgaa 14591865  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 16011512 - 16011456
Alignment:
Q  134 tactagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaa 190  Q
    ||||||||||||||||||||||| ||||||||||| |  ||| |||| |||||||||    
T  16011512 tactagactcttgacccgtgctaccgcacgggtccaactgagaagaatttaaacgaa 16011456  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 39739002 - 39739050
Alignment:
Q  127 tttatattactagactcttgacccgtgctatcgcacgggtcctatcgagc 176  Q
    ||||| |||||||||| |||||||||||  ||||||||||||||||||||    
T  39739002 tttattttactagacttttgacccgtgc-gtcgcacgggtcctatcgagc 39739050  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 10643186 - 10643218
Alignment:
Q  135 actagactcttgacccgtgctatcgcacgggtc 167  Q
    |||||||||||||||||||||||||| ||||||    
T  10643186 actagactcttgacccgtgctatcgcccgggtc 10643218  T

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Target: scaffold0642 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 7792 - 7755
Alignment:
Q  137 tagactcttgacccgtgctatcgcacgggtcctatcga 174  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  7792 tagactcttgacccgtgctgttgcacgggtcctatcga 7755  T

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Target: scaffold0345 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 17705 - 17668
Alignment:
Q  137 tagactcttgacccgtgctatcgcacgggtcctatcga 174  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  17705 tagactcttgacccgtgctgttgcacgggtcctatcga 17668  T

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Target: scaffold0105 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 21277 - 21314
Alignment:
Q  137 tagactcttgacccgtgctatcgcacgggtcctatcga 174  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  21277 tagactcttgacccgtgctgttgcacgggtcctatcga 21314  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 54420819 - 54420779
Alignment:
Q  134 tactagactcttgacccgtgctatcgcacgggtcctatcga 174  Q
    ||||||||| | |||||||||||||||||||||| ||||||    
T  54420819 tactagactttcgacccgtgctatcgcacgggtcttatcga 54420779  T

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